Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC19.24■□□□□ 0.67
NKX3-1Q99801 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
NKX3-1Q99801 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
NKX3-1Q99801 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
NKX3-1Q99801 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
NKX3-1Q99801 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
NKX3-1Q99801 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
NKX3-1Q99801 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
NKX3-1Q99801 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC19.23■□□□□ 0.67
NKX3-1Q99801 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
NKX3-1Q99801 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
NKX3-1Q99801 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
NKX3-1Q99801 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC19.23■□□□□ 0.67
NKX3-1Q99801 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
NKX3-1Q99801 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
NKX3-1Q99801 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC19.23■□□□□ 0.67
NKX3-1Q99801 AC004448.1-201ENST00000458332 883 ntBASIC19.23■□□□□ 0.67
NKX3-1Q99801 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC19.23■□□□□ 0.67
NKX3-1Q99801 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
NKX3-1Q99801 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
NKX3-1Q99801 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
NKX3-1Q99801 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
NKX3-1Q99801 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
NKX3-1Q99801 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC19.23■□□□□ 0.67
NKX3-1Q99801 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
NKX3-1Q99801 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
NKX3-1Q99801 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
NKX3-1Q99801 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
NKX3-1Q99801 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
NKX3-1Q99801 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
NKX3-1Q99801 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
NKX3-1Q99801 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
NKX3-1Q99801 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
NKX3-1Q99801 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
NKX3-1Q99801 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC19.22■□□□□ 0.67
NKX3-1Q99801 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC19.22■□□□□ 0.67
NKX3-1Q99801 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
NKX3-1Q99801 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC19.22■□□□□ 0.67
NKX3-1Q99801 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
NKX3-1Q99801 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC19.22■□□□□ 0.67
NKX3-1Q99801 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
NKX3-1Q99801 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
NKX3-1Q99801 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC19.21■□□□□ 0.67
NKX3-1Q99801 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
NKX3-1Q99801 AC139530.1-201ENST00000575312 1977 ntBASIC19.21■□□□□ 0.67
NKX3-1Q99801 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
NKX3-1Q99801 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
NKX3-1Q99801 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
NKX3-1Q99801 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
NKX3-1Q99801 KRT18P24-201ENST00000344739 1156 ntBASIC19.21■□□□□ 0.67
NKX3-1Q99801 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC19.21■□□□□ 0.67
NKX3-1Q99801 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
NKX3-1Q99801 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
NKX3-1Q99801 AC127496.7-201ENST00000625110 1798 ntBASIC19.21■□□□□ 0.67
NKX3-1Q99801 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.67
NKX3-1Q99801 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
NKX3-1Q99801 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
NKX3-1Q99801 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
NKX3-1Q99801 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
NKX3-1Q99801 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
NKX3-1Q99801 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
NKX3-1Q99801 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC19.2■□□□□ 0.66
NKX3-1Q99801 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
NKX3-1Q99801 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC19.2■□□□□ 0.66
NKX3-1Q99801 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
NKX3-1Q99801 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
NKX3-1Q99801 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
NKX3-1Q99801 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
NKX3-1Q99801 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
NKX3-1Q99801 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
NKX3-1Q99801 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
NKX3-1Q99801 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC19.19■□□□□ 0.66
NKX3-1Q99801 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC19.19■□□□□ 0.66
NKX3-1Q99801 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC19.19■□□□□ 0.66
NKX3-1Q99801 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC19.19■□□□□ 0.66
NKX3-1Q99801 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC19.19■□□□□ 0.66
NKX3-1Q99801 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
NKX3-1Q99801 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
NKX3-1Q99801 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
NKX3-1Q99801 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
NKX3-1Q99801 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
NKX3-1Q99801 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC19.19■□□□□ 0.66
NKX3-1Q99801 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC19.18■□□□□ 0.66
NKX3-1Q99801 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
NKX3-1Q99801 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
NKX3-1Q99801 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC19.18■□□□□ 0.66
NKX3-1Q99801 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
NKX3-1Q99801 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC19.18■□□□□ 0.66
NKX3-1Q99801 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
NKX3-1Q99801 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
NKX3-1Q99801 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
NKX3-1Q99801 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
NKX3-1Q99801 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
NKX3-1Q99801 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
NKX3-1Q99801 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
NKX3-1Q99801 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
NKX3-1Q99801 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
NKX3-1Q99801 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC19.17■□□□□ 0.66
NKX3-1Q99801 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC19.17■□□□□ 0.66
NKX3-1Q99801 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms