Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
BEST3Q8N1M1 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
BEST3Q8N1M1 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC20.51■□□□□ 0.87
BEST3Q8N1M1 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC20.51■□□□□ 0.87
BEST3Q8N1M1 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
BEST3Q8N1M1 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
BEST3Q8N1M1 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
BEST3Q8N1M1 ABCB10P4-201ENST00000566803 2184 ntBASIC20.51■□□□□ 0.87
BEST3Q8N1M1 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
BEST3Q8N1M1 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
BEST3Q8N1M1 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
BEST3Q8N1M1 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
BEST3Q8N1M1 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
BEST3Q8N1M1 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC20.5■□□□□ 0.87
BEST3Q8N1M1 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
BEST3Q8N1M1 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
BEST3Q8N1M1 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
BEST3Q8N1M1 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
BEST3Q8N1M1 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
BEST3Q8N1M1 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC20.5■□□□□ 0.87
BEST3Q8N1M1 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
BEST3Q8N1M1 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC20.5■□□□□ 0.87
BEST3Q8N1M1 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
BEST3Q8N1M1 TSPY26P-201ENST00000476365 1326 ntBASIC20.5■□□□□ 0.87
BEST3Q8N1M1 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
BEST3Q8N1M1 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC20.5■□□□□ 0.87
BEST3Q8N1M1 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC20.5■□□□□ 0.87
BEST3Q8N1M1 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
BEST3Q8N1M1 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
BEST3Q8N1M1 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC20.49■□□□□ 0.87
BEST3Q8N1M1 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
BEST3Q8N1M1 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
BEST3Q8N1M1 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
BEST3Q8N1M1 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
BEST3Q8N1M1 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
BEST3Q8N1M1 AC010525.1-201ENST00000585559 441 ntBASIC20.49■□□□□ 0.87
BEST3Q8N1M1 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
BEST3Q8N1M1 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
BEST3Q8N1M1 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
BEST3Q8N1M1 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
BEST3Q8N1M1 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
BEST3Q8N1M1 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
BEST3Q8N1M1 JTB-203ENST00000368589 1216 ntTSL 2 BASIC20.48■□□□□ 0.87
BEST3Q8N1M1 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
BEST3Q8N1M1 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC20.48■□□□□ 0.87
BEST3Q8N1M1 MIR6821-201ENST00000617625 74 ntBASIC20.48■□□□□ 0.87
BEST3Q8N1M1 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
BEST3Q8N1M1 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
BEST3Q8N1M1 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC20.48■□□□□ 0.87
BEST3Q8N1M1 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
BEST3Q8N1M1 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC20.47■□□□□ 0.87
BEST3Q8N1M1 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC20.47■□□□□ 0.87
BEST3Q8N1M1 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
BEST3Q8N1M1 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
BEST3Q8N1M1 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
BEST3Q8N1M1 AC097381.1-201ENST00000429019 1296 ntBASIC20.47■□□□□ 0.87
BEST3Q8N1M1 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
BEST3Q8N1M1 AICDA-202ENST00000537228 667 ntTSL 5 BASIC20.47■□□□□ 0.87
BEST3Q8N1M1 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC20.47■□□□□ 0.87
BEST3Q8N1M1 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
BEST3Q8N1M1 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
BEST3Q8N1M1 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
BEST3Q8N1M1 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC20.46■□□□□ 0.87
BEST3Q8N1M1 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
BEST3Q8N1M1 AC079630.1-202ENST00000618127 1840 ntBASIC20.46■□□□□ 0.87
BEST3Q8N1M1 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
BEST3Q8N1M1 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC20.46■□□□□ 0.87
BEST3Q8N1M1 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
BEST3Q8N1M1 OR2I1P-207ENST00000453522 948 ntBASIC20.46■□□□□ 0.87
BEST3Q8N1M1 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC20.46■□□□□ 0.87
BEST3Q8N1M1 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
BEST3Q8N1M1 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC20.46■□□□□ 0.87
BEST3Q8N1M1 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC20.46■□□□□ 0.87
BEST3Q8N1M1 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
BEST3Q8N1M1 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
BEST3Q8N1M1 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
BEST3Q8N1M1 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
BEST3Q8N1M1 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
BEST3Q8N1M1 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
BEST3Q8N1M1 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
BEST3Q8N1M1 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
BEST3Q8N1M1 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
BEST3Q8N1M1 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
BEST3Q8N1M1 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
BEST3Q8N1M1 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
BEST3Q8N1M1 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
BEST3Q8N1M1 IGHV3-19-201ENST00000521488 291 ntBASIC20.45■□□□□ 0.86
BEST3Q8N1M1 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC20.45■□□□□ 0.86
BEST3Q8N1M1 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC20.45■□□□□ 0.86
BEST3Q8N1M1 AC087623.3-201ENST00000607047 1098 ntBASIC20.45■□□□□ 0.86
BEST3Q8N1M1 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC20.45■□□□□ 0.86
BEST3Q8N1M1 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC20.45■□□□□ 0.86
BEST3Q8N1M1 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
BEST3Q8N1M1 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
BEST3Q8N1M1 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
BEST3Q8N1M1 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC20.44■□□□□ 0.86
BEST3Q8N1M1 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC20.44■□□□□ 0.86
BEST3Q8N1M1 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
BEST3Q8N1M1 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC20.44■□□□□ 0.86
BEST3Q8N1M1 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms