Protein–RNA interactions for Protein: Q6P087

RPUSD3, Mitochondrial mRNA pseudouridine synthase RPUSD3, humanhuman

Known RBP Predictions only

Length 351 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD3Q6P087 AC144652.1-201ENST00000609974 1624 ntBASIC20.24■□□□□ 0.83
RPUSD3Q6P087 LINC02228-203ENST00000641970 1355 ntBASIC20.24■□□□□ 0.83
RPUSD3Q6P087 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
RPUSD3Q6P087 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC20.24■□□□□ 0.83
RPUSD3Q6P087 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RPUSD3Q6P087 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
RPUSD3Q6P087 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RPUSD3Q6P087 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC20.24■□□□□ 0.83
RPUSD3Q6P087 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
RPUSD3Q6P087 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC20.24■□□□□ 0.83
RPUSD3Q6P087 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RPUSD3Q6P087 CCDC92B-201ENST00000575506 885 ntBASIC20.24■□□□□ 0.83
RPUSD3Q6P087 AC010525.1-201ENST00000585559 441 ntBASIC20.24■□□□□ 0.83
RPUSD3Q6P087 MIR6084-201ENST00000622012 110 ntBASIC20.24■□□□□ 0.83
RPUSD3Q6P087 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RPUSD3Q6P087 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
RPUSD3Q6P087 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RPUSD3Q6P087 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RPUSD3Q6P087 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC20.24■□□□□ 0.83
RPUSD3Q6P087 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RPUSD3Q6P087 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
RPUSD3Q6P087 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RPUSD3Q6P087 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RPUSD3Q6P087 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
RPUSD3Q6P087 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RPUSD3Q6P087 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RPUSD3Q6P087 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RPUSD3Q6P087 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
RPUSD3Q6P087 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
RPUSD3Q6P087 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC20.23■□□□□ 0.83
RPUSD3Q6P087 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
RPUSD3Q6P087 TMEM202-AS1-202ENST00000565181 2325 ntBASIC20.23■□□□□ 0.83
RPUSD3Q6P087 TERF1P2-201ENST00000583350 1212 ntBASIC20.23■□□□□ 0.83
RPUSD3Q6P087 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
RPUSD3Q6P087 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
RPUSD3Q6P087 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
RPUSD3Q6P087 EI24-213ENST00000618552 1747 ntTSL 5 BASIC20.22■□□□□ 0.83
RPUSD3Q6P087 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RPUSD3Q6P087 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RPUSD3Q6P087 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC20.22■□□□□ 0.83
RPUSD3Q6P087 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RPUSD3Q6P087 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC20.22■□□□□ 0.83
RPUSD3Q6P087 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC20.22■□□□□ 0.83
RPUSD3Q6P087 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RPUSD3Q6P087 KRT18P14-201ENST00000534205 1250 ntBASIC20.22■□□□□ 0.83
RPUSD3Q6P087 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC20.22■□□□□ 0.83
RPUSD3Q6P087 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC20.22■□□□□ 0.83
RPUSD3Q6P087 AC092437.1-201ENST00000624794 1048 ntBASIC20.22■□□□□ 0.83
RPUSD3Q6P087 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC20.22■□□□□ 0.83
RPUSD3Q6P087 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RPUSD3Q6P087 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC20.22■□□□□ 0.83
RPUSD3Q6P087 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RPUSD3Q6P087 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
RPUSD3Q6P087 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RPUSD3Q6P087 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
RPUSD3Q6P087 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RPUSD3Q6P087 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RPUSD3Q6P087 MPST-204ENST00000404393 1329 ntTSL 5 BASIC20.22■□□□□ 0.83
RPUSD3Q6P087 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC20.21■□□□□ 0.83
RPUSD3Q6P087 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
RPUSD3Q6P087 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RPUSD3Q6P087 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
RPUSD3Q6P087 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
RPUSD3Q6P087 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC20.21■□□□□ 0.83
RPUSD3Q6P087 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RPUSD3Q6P087 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RPUSD3Q6P087 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC20.21■□□□□ 0.83
RPUSD3Q6P087 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
RPUSD3Q6P087 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC20.21■□□□□ 0.83
RPUSD3Q6P087 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RPUSD3Q6P087 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
RPUSD3Q6P087 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RPUSD3Q6P087 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
RPUSD3Q6P087 NTF6G-201ENST00000591094 616 ntBASIC20.2■□□□□ 0.82
RPUSD3Q6P087 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC20.2■□□□□ 0.82
RPUSD3Q6P087 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RPUSD3Q6P087 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
RPUSD3Q6P087 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RPUSD3Q6P087 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RPUSD3Q6P087 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RPUSD3Q6P087 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RPUSD3Q6P087 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RPUSD3Q6P087 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RPUSD3Q6P087 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RPUSD3Q6P087 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
RPUSD3Q6P087 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
RPUSD3Q6P087 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC20.19■□□□□ 0.82
RPUSD3Q6P087 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC20.19■□□□□ 0.82
RPUSD3Q6P087 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RPUSD3Q6P087 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC20.19■□□□□ 0.82
RPUSD3Q6P087 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RPUSD3Q6P087 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC20.19■□□□□ 0.82
RPUSD3Q6P087 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC20.19■□□□□ 0.82
RPUSD3Q6P087 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RPUSD3Q6P087 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RPUSD3Q6P087 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RPUSD3Q6P087 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RPUSD3Q6P087 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RPUSD3Q6P087 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
RPUSD3Q6P087 GXYLT1P2-201ENST00000433312 1230 ntBASIC20.18■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms