Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.87
VPS53Q5VIR6 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC26.7■■□□□ 1.87
VPS53Q5VIR6 AC241377.3-202ENST00000626088 1088 ntBASIC26.7■■□□□ 1.86
VPS53Q5VIR6 AC241585.3-202ENST00000628937 1088 ntBASIC26.7■■□□□ 1.86
VPS53Q5VIR6 AC245100.8-202ENST00000629247 1058 ntBASIC26.7■■□□□ 1.86
VPS53Q5VIR6 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
VPS53Q5VIR6 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC26.7■■□□□ 1.86
VPS53Q5VIR6 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
VPS53Q5VIR6 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
VPS53Q5VIR6 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC26.69■■□□□ 1.86
VPS53Q5VIR6 GALC-202ENST00000393568 2054 ntTSL 2 BASIC26.69■■□□□ 1.86
VPS53Q5VIR6 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
VPS53Q5VIR6 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
VPS53Q5VIR6 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC26.69■■□□□ 1.86
VPS53Q5VIR6 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC26.69■■□□□ 1.86
VPS53Q5VIR6 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC26.69■■□□□ 1.86
VPS53Q5VIR6 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC26.69■■□□□ 1.86
VPS53Q5VIR6 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC26.68■■□□□ 1.86
VPS53Q5VIR6 SERBP1P1-201ENST00000396021 1160 ntBASIC26.68■■□□□ 1.86
VPS53Q5VIR6 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC26.68■■□□□ 1.86
VPS53Q5VIR6 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC26.68■■□□□ 1.86
VPS53Q5VIR6 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC26.68■■□□□ 1.86
VPS53Q5VIR6 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC26.68■■□□□ 1.86
VPS53Q5VIR6 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
VPS53Q5VIR6 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC26.68■■□□□ 1.86
VPS53Q5VIR6 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC26.68■■□□□ 1.86
VPS53Q5VIR6 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC26.68■■□□□ 1.86
VPS53Q5VIR6 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC26.68■■□□□ 1.86
VPS53Q5VIR6 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC26.68■■□□□ 1.86
VPS53Q5VIR6 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC26.67■■□□□ 1.86
VPS53Q5VIR6 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC26.67■■□□□ 1.86
VPS53Q5VIR6 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC26.67■■□□□ 1.86
VPS53Q5VIR6 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
VPS53Q5VIR6 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
VPS53Q5VIR6 AC096631.2-201ENST00000436136 790 ntBASIC26.67■■□□□ 1.86
VPS53Q5VIR6 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC26.67■■□□□ 1.86
VPS53Q5VIR6 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC26.67■■□□□ 1.86
VPS53Q5VIR6 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC26.67■■□□□ 1.86
VPS53Q5VIR6 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC26.67■■□□□ 1.86
VPS53Q5VIR6 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC26.67■■□□□ 1.86
VPS53Q5VIR6 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
VPS53Q5VIR6 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC26.66■■□□□ 1.86
VPS53Q5VIR6 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
VPS53Q5VIR6 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC26.66■■□□□ 1.86
VPS53Q5VIR6 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC26.66■■□□□ 1.86
VPS53Q5VIR6 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC26.66■■□□□ 1.86
VPS53Q5VIR6 MIR3181-201ENST00000578512 73 ntBASIC26.66■■□□□ 1.86
VPS53Q5VIR6 pRNA.6-201ENST00000610482 90 ntBASIC26.66■■□□□ 1.86
VPS53Q5VIR6 pRNA.5-201ENST00000612139 90 ntBASIC26.66■■□□□ 1.86
VPS53Q5VIR6 AC110285.6-201ENST00000617652 491 ntBASIC26.66■■□□□ 1.86
VPS53Q5VIR6 pRNA.11-201ENST00000618423 90 ntBASIC26.66■■□□□ 1.86
VPS53Q5VIR6 pRNA.13-201ENST00000619112 90 ntBASIC26.66■■□□□ 1.86
VPS53Q5VIR6 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC26.66■■□□□ 1.86
VPS53Q5VIR6 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC26.66■■□□□ 1.86
VPS53Q5VIR6 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
VPS53Q5VIR6 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC26.65■■□□□ 1.86
VPS53Q5VIR6 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC26.65■■□□□ 1.86
VPS53Q5VIR6 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
VPS53Q5VIR6 UNC93B3-201ENST00000308076 687 ntBASIC26.65■■□□□ 1.86
VPS53Q5VIR6 PTCHD3P2-201ENST00000424937 1205 ntBASIC26.65■■□□□ 1.86
VPS53Q5VIR6 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC26.65■■□□□ 1.86
VPS53Q5VIR6 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC26.65■■□□□ 1.86
VPS53Q5VIR6 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC26.65■■□□□ 1.86
VPS53Q5VIR6 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
VPS53Q5VIR6 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
VPS53Q5VIR6 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
VPS53Q5VIR6 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
VPS53Q5VIR6 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
VPS53Q5VIR6 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC26.64■■□□□ 1.86
VPS53Q5VIR6 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC26.64■■□□□ 1.85
VPS53Q5VIR6 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.85
VPS53Q5VIR6 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC26.63■■□□□ 1.85
VPS53Q5VIR6 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
VPS53Q5VIR6 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC26.63■■□□□ 1.85
VPS53Q5VIR6 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
VPS53Q5VIR6 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC26.63■■□□□ 1.85
VPS53Q5VIR6 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
VPS53Q5VIR6 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC26.63■■□□□ 1.85
VPS53Q5VIR6 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC26.63■■□□□ 1.85
VPS53Q5VIR6 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
VPS53Q5VIR6 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC26.63■■□□□ 1.85
VPS53Q5VIR6 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
VPS53Q5VIR6 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
VPS53Q5VIR6 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC26.63■■□□□ 1.85
VPS53Q5VIR6 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
VPS53Q5VIR6 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC26.63■■□□□ 1.85
VPS53Q5VIR6 SYT6-210ENST00000641643 1587 ntBASIC26.63■■□□□ 1.85
VPS53Q5VIR6 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC26.62■■□□□ 1.85
VPS53Q5VIR6 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC26.62■■□□□ 1.85
VPS53Q5VIR6 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
VPS53Q5VIR6 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
VPS53Q5VIR6 MTURN-203ENST00000409688 843 ntTSL 2 BASIC26.62■■□□□ 1.85
VPS53Q5VIR6 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
VPS53Q5VIR6 AL499627.2-201ENST00000606283 725 ntBASIC26.62■■□□□ 1.85
VPS53Q5VIR6 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
VPS53Q5VIR6 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
VPS53Q5VIR6 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
VPS53Q5VIR6 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC26.61■■□□□ 1.85
VPS53Q5VIR6 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
VPS53Q5VIR6 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC26.61■■□□□ 1.85
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms