Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC23.89■■□□□ 1.41
CHD9Q3L8U1 AC105233.4-201ENST00000642045 216 ntBASIC23.89■■□□□ 1.41
CHD9Q3L8U1 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
CHD9Q3L8U1 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
CHD9Q3L8U1 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC23.89■■□□□ 1.41
CHD9Q3L8U1 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
CHD9Q3L8U1 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC23.89■■□□□ 1.41
CHD9Q3L8U1 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC23.89■■□□□ 1.41
CHD9Q3L8U1 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC23.88■■□□□ 1.41
CHD9Q3L8U1 ALDH1A3-203ENST00000557963 1670 ntBASIC23.88■■□□□ 1.41
CHD9Q3L8U1 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC23.88■■□□□ 1.41
CHD9Q3L8U1 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC23.88■■□□□ 1.41
CHD9Q3L8U1 HLA-L-211ENST00000482052 1765 ntBASIC23.88■■□□□ 1.41
CHD9Q3L8U1 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC23.88■■□□□ 1.41
CHD9Q3L8U1 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC23.88■■□□□ 1.41
CHD9Q3L8U1 TFG-210ENST00000620299 1289 ntTSL 5 BASIC23.88■■□□□ 1.41
CHD9Q3L8U1 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC23.87■■□□□ 1.41
CHD9Q3L8U1 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC23.87■■□□□ 1.41
CHD9Q3L8U1 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
CHD9Q3L8U1 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC23.87■■□□□ 1.41
CHD9Q3L8U1 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
CHD9Q3L8U1 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC23.87■■□□□ 1.41
CHD9Q3L8U1 METTL26-203ENST00000397664 604 ntTSL 2 BASIC23.87■■□□□ 1.41
CHD9Q3L8U1 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
CHD9Q3L8U1 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
CHD9Q3L8U1 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
CHD9Q3L8U1 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC23.87■■□□□ 1.41
CHD9Q3L8U1 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
CHD9Q3L8U1 KRT19P1-201ENST00000405746 1186 ntBASIC23.86■■□□□ 1.41
CHD9Q3L8U1 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
CHD9Q3L8U1 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
CHD9Q3L8U1 AC083906.2-201ENST00000511578 360 ntBASIC23.86■■□□□ 1.41
CHD9Q3L8U1 SPI1-203ENST00000533030 661 ntTSL 2 BASIC23.86■■□□□ 1.41
CHD9Q3L8U1 TBCB-214ENST00000629269 413 ntTSL 5 BASIC23.86■■□□□ 1.41
CHD9Q3L8U1 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC23.86■■□□□ 1.41
CHD9Q3L8U1 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC23.86■■□□□ 1.41
CHD9Q3L8U1 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
CHD9Q3L8U1 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
CHD9Q3L8U1 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC23.86■■□□□ 1.41
CHD9Q3L8U1 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
CHD9Q3L8U1 MFF-208ENST00000409616 1247 ntTSL 5 BASIC23.86■■□□□ 1.41
CHD9Q3L8U1 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC23.86■■□□□ 1.41
CHD9Q3L8U1 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
CHD9Q3L8U1 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
CHD9Q3L8U1 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
CHD9Q3L8U1 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
CHD9Q3L8U1 ARL16-209ENST00000573715 763 ntTSL 3 BASIC23.85■■□□□ 1.41
CHD9Q3L8U1 ARL16-211ENST00000576135 694 ntTSL 3 BASIC23.85■■□□□ 1.41
CHD9Q3L8U1 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC23.85■■□□□ 1.41
CHD9Q3L8U1 MDK-213ENST00000617138 635 ntTSL 2 BASIC23.85■■□□□ 1.41
CHD9Q3L8U1 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
CHD9Q3L8U1 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC23.85■■□□□ 1.41
CHD9Q3L8U1 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
CHD9Q3L8U1 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC23.85■■□□□ 1.41
CHD9Q3L8U1 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC23.85■■□□□ 1.41
CHD9Q3L8U1 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
CHD9Q3L8U1 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
CHD9Q3L8U1 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC23.84■■□□□ 1.41
CHD9Q3L8U1 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC23.84■■□□□ 1.41
CHD9Q3L8U1 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC23.84■■□□□ 1.41
CHD9Q3L8U1 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC23.84■■□□□ 1.41
CHD9Q3L8U1 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
CHD9Q3L8U1 METTL15-202ENST00000403099 795 ntTSL 5 BASIC23.84■■□□□ 1.41
CHD9Q3L8U1 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
CHD9Q3L8U1 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
CHD9Q3L8U1 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC23.83■■□□□ 1.41
CHD9Q3L8U1 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC23.83■■□□□ 1.4
CHD9Q3L8U1 AC073210.2-201ENST00000430369 194 ntBASIC23.82■■□□□ 1.4
CHD9Q3L8U1 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC23.82■■□□□ 1.4
CHD9Q3L8U1 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC23.82■■□□□ 1.4
CHD9Q3L8U1 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
CHD9Q3L8U1 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC23.82■■□□□ 1.4
CHD9Q3L8U1 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC23.82■■□□□ 1.4
CHD9Q3L8U1 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC23.82■■□□□ 1.4
CHD9Q3L8U1 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC23.82■■□□□ 1.4
CHD9Q3L8U1 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC23.82■■□□□ 1.4
CHD9Q3L8U1 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
CHD9Q3L8U1 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC23.82■■□□□ 1.4
CHD9Q3L8U1 RARA-203ENST00000394086 2008 ntTSL 2 BASIC23.82■■□□□ 1.4
CHD9Q3L8U1 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
CHD9Q3L8U1 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC23.81■■□□□ 1.4
CHD9Q3L8U1 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC23.81■■□□□ 1.4
CHD9Q3L8U1 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC23.81■■□□□ 1.4
CHD9Q3L8U1 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
CHD9Q3L8U1 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC23.81■■□□□ 1.4
CHD9Q3L8U1 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
CHD9Q3L8U1 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
CHD9Q3L8U1 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC23.81■■□□□ 1.4
CHD9Q3L8U1 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
CHD9Q3L8U1 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
CHD9Q3L8U1 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC23.81■■□□□ 1.4
CHD9Q3L8U1 STX4-202ENST00000394998 1498 ntTSL 2 BASIC23.81■■□□□ 1.4
CHD9Q3L8U1 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
CHD9Q3L8U1 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC23.81■■□□□ 1.4
CHD9Q3L8U1 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC23.81■■□□□ 1.4
CHD9Q3L8U1 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
CHD9Q3L8U1 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
CHD9Q3L8U1 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CHD9Q3L8U1 DUX4L4-201ENST00000566884 1269 ntBASIC23.8■■□□□ 1.4
CHD9Q3L8U1 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 15.8 ms