Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
RNF4P78317 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
RNF4P78317 AC008764.7-201ENST00000593779 1081 ntBASIC20.52■□□□□ 0.88
RNF4P78317 AC233992.3-201ENST00000607491 485 ntBASIC20.52■□□□□ 0.88
RNF4P78317 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RNF4P78317 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
RNF4P78317 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC20.52■□□□□ 0.88
RNF4P78317 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC20.52■□□□□ 0.87
RNF4P78317 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC20.51■□□□□ 0.87
RNF4P78317 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC20.51■□□□□ 0.87
RNF4P78317 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RNF4P78317 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
RNF4P78317 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
RNF4P78317 AC027682.1-201ENST00000562846 899 ntBASIC20.51■□□□□ 0.87
RNF4P78317 AC004687.1-201ENST00000579003 1625 ntBASIC20.51■□□□□ 0.87
RNF4P78317 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC20.51■□□□□ 0.87
RNF4P78317 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
RNF4P78317 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC20.51■□□□□ 0.87
RNF4P78317 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
RNF4P78317 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RNF4P78317 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
RNF4P78317 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RNF4P78317 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RNF4P78317 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC20.5■□□□□ 0.87
RNF4P78317 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC20.5■□□□□ 0.87
RNF4P78317 DUSP8P3-201ENST00000399571 1760 ntBASIC20.5■□□□□ 0.87
RNF4P78317 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC20.5■□□□□ 0.87
RNF4P78317 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RNF4P78317 SLC47A1P1-202ENST00000449666 945 ntBASIC20.5■□□□□ 0.87
RNF4P78317 OR2I1P-207ENST00000453522 948 ntBASIC20.5■□□□□ 0.87
RNF4P78317 AC091305.1-201ENST00000479476 895 ntBASIC20.5■□□□□ 0.87
RNF4P78317 MAG-206ENST00000597035 542 ntTSL 4 BASIC20.5■□□□□ 0.87
RNF4P78317 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
RNF4P78317 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
RNF4P78317 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC20.5■□□□□ 0.87
RNF4P78317 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
RNF4P78317 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC20.5■□□□□ 0.87
RNF4P78317 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC20.5■□□□□ 0.87
RNF4P78317 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
RNF4P78317 RASA4CP-201ENST00000424092 1398 ntBASIC20.49■□□□□ 0.87
RNF4P78317 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
RNF4P78317 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RNF4P78317 AC099791.1-201ENST00000416440 715 ntBASIC20.49■□□□□ 0.87
RNF4P78317 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
RNF4P78317 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
RNF4P78317 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
RNF4P78317 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RNF4P78317 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC20.49■□□□□ 0.87
RNF4P78317 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
RNF4P78317 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
RNF4P78317 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
RNF4P78317 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
RNF4P78317 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
RNF4P78317 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC20.48■□□□□ 0.87
RNF4P78317 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RNF4P78317 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
RNF4P78317 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RNF4P78317 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RNF4P78317 EBPL-204ENST00000378272 766 ntTSL 3 BASIC20.48■□□□□ 0.87
RNF4P78317 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RNF4P78317 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RNF4P78317 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC20.48■□□□□ 0.87
RNF4P78317 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC20.48■□□□□ 0.87
RNF4P78317 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC20.48■□□□□ 0.87
RNF4P78317 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RNF4P78317 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC20.48■□□□□ 0.87
RNF4P78317 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RNF4P78317 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
RNF4P78317 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
RNF4P78317 HYI-206ENST00000372434 1025 ntTSL 5 BASIC20.47■□□□□ 0.87
RNF4P78317 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC20.47■□□□□ 0.87
RNF4P78317 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
RNF4P78317 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC20.47■□□□□ 0.87
RNF4P78317 AC010525.1-201ENST00000585559 441 ntBASIC20.47■□□□□ 0.87
RNF4P78317 CA15P2-201ENST00000611168 834 ntBASIC20.47■□□□□ 0.87
RNF4P78317 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RNF4P78317 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
RNF4P78317 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RNF4P78317 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC20.47■□□□□ 0.87
RNF4P78317 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
RNF4P78317 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RNF4P78317 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
RNF4P78317 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC20.46■□□□□ 0.87
RNF4P78317 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
RNF4P78317 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RNF4P78317 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
RNF4P78317 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
RNF4P78317 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC20.46■□□□□ 0.87
RNF4P78317 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RNF4P78317 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
RNF4P78317 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
RNF4P78317 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
RNF4P78317 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
RNF4P78317 STX4-202ENST00000394998 1498 ntTSL 2 BASIC20.45■□□□□ 0.86
RNF4P78317 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC20.45■□□□□ 0.86
RNF4P78317 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC20.45■□□□□ 0.86
RNF4P78317 MPST-208ENST00000628507 698 ntTSL 5 BASIC20.45■□□□□ 0.86
RNF4P78317 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RNF4P78317 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC20.45■□□□□ 0.86
RNF4P78317 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms