Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC28.22■■■□□ 2.11
RFC4P35249 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC28.21■■■□□ 2.11
RFC4P35249 AC144652.1-201ENST00000609974 1624 ntBASIC28.21■■■□□ 2.11
RFC4P35249 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC28.21■■■□□ 2.11
RFC4P35249 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
RFC4P35249 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC28.21■■■□□ 2.11
RFC4P35249 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
RFC4P35249 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
RFC4P35249 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC28.2■■■□□ 2.11
RFC4P35249 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC28.2■■■□□ 2.11
RFC4P35249 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC28.2■■■□□ 2.1
RFC4P35249 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
RFC4P35249 AC006970.2-201ENST00000450065 779 ntBASIC28.2■■■□□ 2.1
RFC4P35249 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
RFC4P35249 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
RFC4P35249 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
RFC4P35249 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC28.2■■■□□ 2.1
RFC4P35249 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
RFC4P35249 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC28.2■■■□□ 2.1
RFC4P35249 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
RFC4P35249 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC28.2■■■□□ 2.1
RFC4P35249 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC28.19■■■□□ 2.1
RFC4P35249 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
RFC4P35249 ABHD17AP1-201ENST00000358206 933 ntBASIC28.19■■■□□ 2.1
RFC4P35249 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC28.19■■■□□ 2.1
RFC4P35249 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC28.19■■■□□ 2.1
RFC4P35249 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC28.19■■■□□ 2.1
RFC4P35249 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC28.18■■■□□ 2.1
RFC4P35249 CROCCP5-201ENST00000436658 830 ntBASIC28.18■■■□□ 2.1
RFC4P35249 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC28.18■■■□□ 2.1
RFC4P35249 AL109923.1-201ENST00000618799 583 ntBASIC28.18■■■□□ 2.1
RFC4P35249 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
RFC4P35249 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
RFC4P35249 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
RFC4P35249 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
RFC4P35249 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC28.17■■■□□ 2.1
RFC4P35249 AL355802.2-201ENST00000402069 882 ntBASIC28.17■■■□□ 2.1
RFC4P35249 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
RFC4P35249 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
RFC4P35249 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
RFC4P35249 WWOX-218ENST00000627394 894 ntTSL 5 BASIC28.16■■■□□ 2.1
RFC4P35249 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC28.16■■■□□ 2.1
RFC4P35249 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC28.16■■■□□ 2.1
RFC4P35249 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
RFC4P35249 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC28.16■■■□□ 2.1
RFC4P35249 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC28.16■■■□□ 2.1
RFC4P35249 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
RFC4P35249 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
RFC4P35249 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC28.15■■■□□ 2.1
RFC4P35249 KRT19P1-201ENST00000405746 1186 ntBASIC28.15■■■□□ 2.1
RFC4P35249 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC28.15■■■□□ 2.1
RFC4P35249 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC28.15■■■□□ 2.1
RFC4P35249 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
RFC4P35249 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
RFC4P35249 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
RFC4P35249 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC28.14■■■□□ 2.1
RFC4P35249 BX005040.4-201ENST00000637145 1518 ntBASIC28.14■■■□□ 2.1
RFC4P35249 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
RFC4P35249 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC28.14■■■□□ 2.1
RFC4P35249 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC28.14■■■□□ 2.1
RFC4P35249 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
RFC4P35249 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
RFC4P35249 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.09
RFC4P35249 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
RFC4P35249 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC28.13■■■□□ 2.09
RFC4P35249 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
RFC4P35249 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
RFC4P35249 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC28.13■■■□□ 2.09
RFC4P35249 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC28.13■■■□□ 2.09
RFC4P35249 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC28.13■■■□□ 2.09
RFC4P35249 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
RFC4P35249 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
RFC4P35249 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
RFC4P35249 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
RFC4P35249 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC28.13■■■□□ 2.09
RFC4P35249 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
RFC4P35249 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
RFC4P35249 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC28.12■■■□□ 2.09
RFC4P35249 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
RFC4P35249 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC28.12■■■□□ 2.09
RFC4P35249 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC28.12■■■□□ 2.09
RFC4P35249 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
RFC4P35249 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC28.11■■■□□ 2.09
RFC4P35249 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
RFC4P35249 METTL26-203ENST00000397664 604 ntTSL 2 BASIC28.11■■■□□ 2.09
RFC4P35249 NCF1B-203ENST00000435988 1254 ntBASIC28.11■■■□□ 2.09
RFC4P35249 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
RFC4P35249 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC28.11■■■□□ 2.09
RFC4P35249 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC28.11■■■□□ 2.09
RFC4P35249 EI24-213ENST00000618552 1747 ntTSL 5 BASIC28.11■■■□□ 2.09
RFC4P35249 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
RFC4P35249 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC28.11■■■□□ 2.09
RFC4P35249 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
RFC4P35249 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
RFC4P35249 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC28.1■■■□□ 2.09
RFC4P35249 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC28.1■■■□□ 2.09
RFC4P35249 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC28.1■■■□□ 2.09
RFC4P35249 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC28.1■■■□□ 2.09
RFC4P35249 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
RFC4P35249 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC28.1■■■□□ 2.09
Retrieved 100 of 98,524 protein–RNA pairs in 9.2 ms