Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
USF1P22415 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
USF1P22415 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
USF1P22415 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC18.68■□□□□ 0.58
USF1P22415 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
USF1P22415 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
USF1P22415 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
USF1P22415 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
USF1P22415 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
USF1P22415 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
USF1P22415 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
USF1P22415 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
USF1P22415 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC18.67■□□□□ 0.58
USF1P22415 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
USF1P22415 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
USF1P22415 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
USF1P22415 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
USF1P22415 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
USF1P22415 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
USF1P22415 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
USF1P22415 AC133637.1-201ENST00000624115 1537 ntBASIC18.66■□□□□ 0.58
USF1P22415 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
USF1P22415 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC18.66■□□□□ 0.58
USF1P22415 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC18.66■□□□□ 0.58
USF1P22415 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
USF1P22415 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
USF1P22415 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
USF1P22415 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC18.65■□□□□ 0.58
USF1P22415 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
USF1P22415 HACD1-201ENST00000326961 773 ntTSL 2 BASIC18.65■□□□□ 0.58
USF1P22415 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
USF1P22415 MIR572-201ENST00000384983 95 ntBASIC18.65■□□□□ 0.58
USF1P22415 AC027612.3-201ENST00000413684 1047 ntBASIC18.65■□□□□ 0.58
USF1P22415 AC123595.1-201ENST00000440769 1046 ntBASIC18.65■□□□□ 0.58
USF1P22415 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC18.65■□□□□ 0.58
USF1P22415 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC18.65■□□□□ 0.58
USF1P22415 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC18.65■□□□□ 0.58
USF1P22415 AC022517.1-201ENST00000592429 346 ntBASIC18.65■□□□□ 0.58
USF1P22415 AL137784.2-201ENST00000607332 1000 ntBASIC18.65■□□□□ 0.58
USF1P22415 RAB43-208ENST00000615093 783 ntTSL 5 BASIC18.65■□□□□ 0.58
USF1P22415 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC18.65■□□□□ 0.58
USF1P22415 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC18.65■□□□□ 0.58
USF1P22415 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC18.65■□□□□ 0.58
USF1P22415 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC18.65■□□□□ 0.58
USF1P22415 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC18.65■□□□□ 0.58
USF1P22415 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
USF1P22415 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
USF1P22415 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
USF1P22415 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
USF1P22415 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
USF1P22415 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
USF1P22415 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC18.64■□□□□ 0.57
USF1P22415 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
USF1P22415 KRT18P5-201ENST00000436075 1291 ntBASIC18.64■□□□□ 0.57
USF1P22415 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
USF1P22415 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
USF1P22415 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC18.64■□□□□ 0.57
USF1P22415 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC18.64■□□□□ 0.57
USF1P22415 AL354811.1-201ENST00000610286 706 ntBASIC18.64■□□□□ 0.57
USF1P22415 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
USF1P22415 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
USF1P22415 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
USF1P22415 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
USF1P22415 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
USF1P22415 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC18.64■□□□□ 0.57
USF1P22415 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
USF1P22415 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
USF1P22415 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
USF1P22415 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
USF1P22415 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
USF1P22415 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC18.63■□□□□ 0.57
USF1P22415 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC18.63■□□□□ 0.57
USF1P22415 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC18.63■□□□□ 0.57
USF1P22415 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC18.63■□□□□ 0.57
USF1P22415 AC012414.1-201ENST00000556676 535 ntBASIC18.63■□□□□ 0.57
USF1P22415 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
USF1P22415 AL031602.1-201ENST00000633169 911 ntBASIC18.63■□□□□ 0.57
USF1P22415 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC18.63■□□□□ 0.57
USF1P22415 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
USF1P22415 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
USF1P22415 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
USF1P22415 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC18.63■□□□□ 0.57
USF1P22415 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
USF1P22415 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
USF1P22415 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC18.63■□□□□ 0.57
USF1P22415 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
USF1P22415 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
USF1P22415 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
USF1P22415 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
USF1P22415 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC18.62■□□□□ 0.57
USF1P22415 DUX4L2-201ENST00000561772 1275 ntBASIC18.62■□□□□ 0.57
USF1P22415 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
USF1P22415 AL499627.2-201ENST00000606283 725 ntBASIC18.62■□□□□ 0.57
USF1P22415 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC18.62■□□□□ 0.57
USF1P22415 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC18.62■□□□□ 0.57
USF1P22415 DUX4L6-201ENST00000626483 1275 ntBASIC18.62■□□□□ 0.57
USF1P22415 DUX4L1-201ENST00000627662 1275 ntBASIC18.62■□□□□ 0.57
USF1P22415 DUX4L8-201ENST00000629013 1275 ntBASIC18.62■□□□□ 0.57
USF1P22415 DUX4L3-201ENST00000630187 1275 ntBASIC18.62■□□□□ 0.57
USF1P22415 DUX4L7-201ENST00000630678 1275 ntBASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms