Protein–RNA interactions for Protein: P18846

ATF1, Cyclic AMP-dependent transcription factor ATF-1, humanhuman

Predictions only

Length 271 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATF1P18846 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC19.43■□□□□ 0.7
ATF1P18846 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
ATF1P18846 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC19.42■□□□□ 0.7
ATF1P18846 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC19.42■□□□□ 0.7
ATF1P18846 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ATF1P18846 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
ATF1P18846 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
ATF1P18846 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ATF1P18846 FBXW4P1-201ENST00000426721 2239 ntBASIC19.42■□□□□ 0.7
ATF1P18846 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC19.42■□□□□ 0.7
ATF1P18846 AC004448.1-201ENST00000458332 883 ntBASIC19.42■□□□□ 0.7
ATF1P18846 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC19.42■□□□□ 0.7
ATF1P18846 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC19.42■□□□□ 0.7
ATF1P18846 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ATF1P18846 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
ATF1P18846 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ATF1P18846 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ATF1P18846 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
ATF1P18846 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC19.41■□□□□ 0.7
ATF1P18846 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ATF1P18846 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC19.41■□□□□ 0.7
ATF1P18846 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ATF1P18846 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ATF1P18846 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC19.41■□□□□ 0.7
ATF1P18846 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
ATF1P18846 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
ATF1P18846 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
ATF1P18846 AC080038.3-201ENST00000623346 1952 ntBASIC19.41■□□□□ 0.7
ATF1P18846 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ATF1P18846 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC19.41■□□□□ 0.7
ATF1P18846 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC19.4■□□□□ 0.7
ATF1P18846 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC19.4■□□□□ 0.7
ATF1P18846 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
ATF1P18846 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC19.4■□□□□ 0.7
ATF1P18846 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
ATF1P18846 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC19.4■□□□□ 0.7
ATF1P18846 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
ATF1P18846 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC19.4■□□□□ 0.7
ATF1P18846 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ATF1P18846 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
ATF1P18846 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC19.4■□□□□ 0.7
ATF1P18846 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
ATF1P18846 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
ATF1P18846 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
ATF1P18846 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC19.39■□□□□ 0.69
ATF1P18846 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
ATF1P18846 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
ATF1P18846 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
ATF1P18846 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
ATF1P18846 MIR4508-201ENST00000584178 70 ntBASIC19.39■□□□□ 0.69
ATF1P18846 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
ATF1P18846 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC19.39■□□□□ 0.69
ATF1P18846 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
ATF1P18846 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
ATF1P18846 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
ATF1P18846 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
ATF1P18846 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC19.38■□□□□ 0.69
ATF1P18846 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
ATF1P18846 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC19.38■□□□□ 0.69
ATF1P18846 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC19.38■□□□□ 0.69
ATF1P18846 AC012354.3-201ENST00000623734 483 ntBASIC19.38■□□□□ 0.69
ATF1P18846 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
ATF1P18846 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
ATF1P18846 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
ATF1P18846 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
ATF1P18846 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
ATF1P18846 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
ATF1P18846 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
ATF1P18846 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ATF1P18846 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
ATF1P18846 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ATF1P18846 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ATF1P18846 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
ATF1P18846 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC19.36■□□□□ 0.69
ATF1P18846 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC19.36■□□□□ 0.69
ATF1P18846 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
ATF1P18846 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
ATF1P18846 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC19.36■□□□□ 0.69
ATF1P18846 LSM7-203ENST00000585409 512 ntTSL 2 BASIC19.36■□□□□ 0.69
ATF1P18846 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
ATF1P18846 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
ATF1P18846 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
ATF1P18846 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC19.36■□□□□ 0.69
ATF1P18846 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
ATF1P18846 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC19.35■□□□□ 0.69
ATF1P18846 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC19.35■□□□□ 0.69
ATF1P18846 AL033527.3-201ENST00000566366 1196 ntBASIC19.35■□□□□ 0.69
ATF1P18846 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
ATF1P18846 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
ATF1P18846 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
ATF1P18846 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
ATF1P18846 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
ATF1P18846 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
ATF1P18846 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
ATF1P18846 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
ATF1P18846 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
ATF1P18846 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC19.34■□□□□ 0.69
ATF1P18846 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
ATF1P18846 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
ATF1P18846 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 10.6 ms