Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
HDAC3O15379 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC21.57■■□□□ 1.04
HDAC3O15379 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HDAC3O15379 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
HDAC3O15379 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HDAC3O15379 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
HDAC3O15379 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HDAC3O15379 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC21.56■■□□□ 1.04
HDAC3O15379 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
HDAC3O15379 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
HDAC3O15379 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HDAC3O15379 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC21.56■■□□□ 1.04
HDAC3O15379 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
HDAC3O15379 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC21.56■■□□□ 1.04
HDAC3O15379 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HDAC3O15379 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC21.55■■□□□ 1.04
HDAC3O15379 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC21.55■■□□□ 1.04
HDAC3O15379 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
HDAC3O15379 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC21.55■■□□□ 1.04
HDAC3O15379 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
HDAC3O15379 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
HDAC3O15379 LSM7-203ENST00000585409 512 ntTSL 2 BASIC21.55■■□□□ 1.04
HDAC3O15379 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC21.55■■□□□ 1.04
HDAC3O15379 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HDAC3O15379 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC21.55■■□□□ 1.04
HDAC3O15379 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
HDAC3O15379 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC21.55■■□□□ 1.04
HDAC3O15379 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC21.55■■□□□ 1.04
HDAC3O15379 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HDAC3O15379 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC21.55■■□□□ 1.04
HDAC3O15379 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HDAC3O15379 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC21.54■■□□□ 1.04
HDAC3O15379 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
HDAC3O15379 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC21.54■■□□□ 1.04
HDAC3O15379 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
HDAC3O15379 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC21.54■■□□□ 1.04
HDAC3O15379 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC21.54■■□□□ 1.04
HDAC3O15379 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC21.54■■□□□ 1.04
HDAC3O15379 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
HDAC3O15379 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC21.53■■□□□ 1.04
HDAC3O15379 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
HDAC3O15379 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC21.53■■□□□ 1.04
HDAC3O15379 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
HDAC3O15379 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
HDAC3O15379 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC21.53■■□□□ 1.04
HDAC3O15379 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC21.53■■□□□ 1.04
HDAC3O15379 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC21.53■■□□□ 1.04
HDAC3O15379 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
HDAC3O15379 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
HDAC3O15379 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC21.53■■□□□ 1.04
HDAC3O15379 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC21.53■■□□□ 1.04
HDAC3O15379 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
HDAC3O15379 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
HDAC3O15379 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
HDAC3O15379 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
HDAC3O15379 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC21.51■■□□□ 1.03
HDAC3O15379 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
HDAC3O15379 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
HDAC3O15379 PKD1P6-201ENST00000343738 4769 ntBASIC21.51■■□□□ 1.03
HDAC3O15379 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
HDAC3O15379 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
HDAC3O15379 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC21.51■■□□□ 1.03
HDAC3O15379 BHLHE23-202ENST00000612929 1109 ntBASIC21.51■■□□□ 1.03
HDAC3O15379 AC074183.2-201ENST00000623112 922 ntBASIC21.51■■□□□ 1.03
HDAC3O15379 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC21.51■■□□□ 1.03
HDAC3O15379 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
HDAC3O15379 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
HDAC3O15379 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
HDAC3O15379 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
HDAC3O15379 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC21.5■■□□□ 1.03
HDAC3O15379 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
HDAC3O15379 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
HDAC3O15379 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
HDAC3O15379 HSD17B1P1-201ENST00000590052 955 ntBASIC21.5■■□□□ 1.03
HDAC3O15379 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
HDAC3O15379 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC21.5■■□□□ 1.03
HDAC3O15379 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
HDAC3O15379 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
HDAC3O15379 REST-206ENST00000612429 1376 ntTSL 5 BASIC21.49■■□□□ 1.03
HDAC3O15379 REST-207ENST00000616975 1370 ntTSL 5 BASIC21.49■■□□□ 1.03
HDAC3O15379 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
HDAC3O15379 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
HDAC3O15379 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
HDAC3O15379 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
HDAC3O15379 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC21.49■■□□□ 1.03
HDAC3O15379 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
HDAC3O15379 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
HDAC3O15379 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
HDAC3O15379 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
HDAC3O15379 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
HDAC3O15379 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
HDAC3O15379 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
HDAC3O15379 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
HDAC3O15379 AL024507.2-201ENST00000606070 2574 ntBASIC21.48■■□□□ 1.03
HDAC3O15379 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
HDAC3O15379 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC21.48■■□□□ 1.03
HDAC3O15379 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
HDAC3O15379 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
HDAC3O15379 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
HDAC3O15379 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms