Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 AL591926.3-201ENST00000611630 238 ntBASIC13.65□□□□□ -0.22
SHROOM3Q8TF72 MECP2-213ENST00000622433 1071 ntTSL 5 BASIC13.65□□□□□ -0.22
SHROOM3Q8TF72 ZFAND1-201ENST00000220669 1798 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
SHROOM3Q8TF72 ZFAND1-221ENST00000523096 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC13.65□□□□□ -0.22
SHROOM3Q8TF72 ABCA2-203ENST00000371605 8151 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.22
SHROOM3Q8TF72 ZFP36L2-201ENST00000282388 3696 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
SHROOM3Q8TF72 PPT1-204ENST00000439754 2195 ntTSL 3 BASIC13.65□□□□□ -0.22
SHROOM3Q8TF72 SERPINA1-205ENST00000404814 1628 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
SHROOM3Q8TF72 BTNL8-202ENST00000340184 2071 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.23
SHROOM3Q8TF72 RNF34-203ENST00000392465 2051 ntAPPRIS P3 TSL 5 BASIC13.65□□□□□ -0.23
SHROOM3Q8TF72 KRT15-202ENST00000393974 3758 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
SHROOM3Q8TF72 EPN2-205ENST00000395626 2863 ntTSL 2 BASIC13.64□□□□□ -0.23
SHROOM3Q8TF72 HACD3-201ENST00000261875 3228 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SHROOM3Q8TF72 STRAP-202ENST00000419869 1866 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SHROOM3Q8TF72 KIZ-208ENST00000616848 1875 ntAPPRIS ALT2 TSL 2 BASIC13.64□□□□□ -0.23
SHROOM3Q8TF72 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SHROOM3Q8TF72 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SHROOM3Q8TF72 AL031728.1-201ENST00000449034 2479 ntTSL 3 BASIC13.64□□□□□ -0.23
SHROOM3Q8TF72 ACVR1B-202ENST00000415850 1665 ntTSL 2 BASIC13.64□□□□□ -0.23
SHROOM3Q8TF72 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SHROOM3Q8TF72 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SHROOM3Q8TF72 HIST1H2BJ-201ENST00000339812 381 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
SHROOM3Q8TF72 KLHL7-204ENST00000410047 1233 ntTSL 5 BASIC13.64□□□□□ -0.23
SHROOM3Q8TF72 AC006372.2-201ENST00000433660 292 ntTSL 3 BASIC13.64□□□□□ -0.23
SHROOM3Q8TF72 RPL3P5-201ENST00000441645 1232 ntBASIC13.64□□□□□ -0.23
SHROOM3Q8TF72 AL662797.1-201ENST00000442852 799 ntTSL 3 BASIC13.64□□□□□ -0.23
SHROOM3Q8TF72 CLDN25-201ENST00000453129 754 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
SHROOM3Q8TF72 ZSCAN2-208ENST00000485222 910 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
SHROOM3Q8TF72 AC083801.1-201ENST00000491689 358 ntBASIC13.64□□□□□ -0.23
SHROOM3Q8TF72 MRPS36-204ENST00000512880 1200 ntTSL 5 BASIC13.64□□□□□ -0.23
SHROOM3Q8TF72 ANO3-205ENST00000531646 1264 ntTSL 4 BASIC13.64□□□□□ -0.23
SHROOM3Q8TF72 ZSCAN2-210ENST00000538076 1109 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
SHROOM3Q8TF72 TCL1A-209ENST00000557043 980 ntTSL 3 BASIC13.64□□□□□ -0.23
SHROOM3Q8TF72 IGHV3OR15-7-201ENST00000558565 359 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
SHROOM3Q8TF72 SNX11-210ENST00000582104 1282 ntTSL 2 BASIC13.64□□□□□ -0.23
SHROOM3Q8TF72 MRPS36-205ENST00000602380 1200 ntTSL 2 BASIC13.64□□□□□ -0.23
SHROOM3Q8TF72 NAMA-206ENST00000605377 509 ntTSL 5 BASIC13.64□□□□□ -0.23
SHROOM3Q8TF72 AC026336.4-201ENST00000624565 1050 ntBASIC13.64□□□□□ -0.23
SHROOM3Q8TF72 AC008764.8-201ENST00000623966 2717 ntBASIC13.64□□□□□ -0.23
SHROOM3Q8TF72 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
SHROOM3Q8TF72 ARRB2-218ENST00000575877 1579 ntTSL 5 BASIC13.64□□□□□ -0.23
SHROOM3Q8TF72 LAMP2-201ENST00000200639 1867 ntAPPRIS P5 TSL 1 (best) BASIC13.64□□□□□ -0.23
SHROOM3Q8TF72 ZSCAN5C-202ENST00000534327 1892 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
SHROOM3Q8TF72 CYB5D1-203ENST00000571846 1870 ntTSL 5 BASIC13.64□□□□□ -0.23
SHROOM3Q8TF72 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SHROOM3Q8TF72 RBFOX3-203ENST00000580155 1519 ntAPPRIS P2 TSL 2 BASIC13.64□□□□□ -0.23
SHROOM3Q8TF72 SYBU-203ENST00000408889 2776 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
SHROOM3Q8TF72 KCNH4-202ENST00000607371 3723 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
SHROOM3Q8TF72 DAO-201ENST00000228476 1756 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SHROOM3Q8TF72 NGLY1-205ENST00000417874 2062 ntTSL 2 BASIC13.64□□□□□ -0.23
SHROOM3Q8TF72 DPH2-202ENST00000396758 1738 ntTSL 3 BASIC13.64□□□□□ -0.23
SHROOM3Q8TF72 TREH-202ENST00000397925 1718 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
SHROOM3Q8TF72 ZCWPW1-208ENST00000490721 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
SHROOM3Q8TF72 TNFRSF11A-205ENST00000616710 3809 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
SHROOM3Q8TF72 CNOT4-204ENST00000414802 1687 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
SHROOM3Q8TF72 ARL8B-202ENST00000419534 1684 ntTSL 2 BASIC13.64□□□□□ -0.23
SHROOM3Q8TF72 ZNF691-201ENST00000372502 1910 ntAPPRIS ALT2 TSL 2 BASIC13.64□□□□□ -0.23
SHROOM3Q8TF72 DHX30-201ENST00000348968 3994 ntTSL 5 BASIC13.64□□□□□ -0.23
SHROOM3Q8TF72 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SHROOM3Q8TF72 HEY2-202ENST00000368365 2461 ntTSL 2 BASIC13.64□□□□□ -0.23
SHROOM3Q8TF72 ATP6V0D1-218ENST00000602876 1554 ntTSL 5 BASIC13.63□□□□□ -0.23
SHROOM3Q8TF72 SYNE3-201ENST00000334258 3275 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
SHROOM3Q8TF72 TNNI2-201ENST00000252898 678 ntAPPRIS P3 TSL 3 BASIC13.63□□□□□ -0.23
SHROOM3Q8TF72 GEMIN8P4-201ENST00000380526 729 ntBASIC13.63□□□□□ -0.23
SHROOM3Q8TF72 TNNI2-202ENST00000381905 706 ntAPPRIS ALT1 TSL 3 BASIC13.63□□□□□ -0.23
SHROOM3Q8TF72 TNNI2-203ENST00000381906 745 ntAPPRIS P3 TSL 3 BASIC13.63□□□□□ -0.23
SHROOM3Q8TF72 TNNI2-204ENST00000381911 743 ntAPPRIS P3 TSL 2 BASIC13.63□□□□□ -0.23
SHROOM3Q8TF72 TRBV4-1-201ENST00000390357 373 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
SHROOM3Q8TF72 TRBV4-2-201ENST00000390392 455 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
SHROOM3Q8TF72 AP002856.2-201ENST00000416553 584 ntTSL 3 BASIC13.63□□□□□ -0.23
SHROOM3Q8TF72 AL158166.1-201ENST00000433110 371 ntTSL 2 BASIC13.63□□□□□ -0.23
SHROOM3Q8TF72 AC114781.1-201ENST00000450559 1028 ntBASIC13.63□□□□□ -0.23
SHROOM3Q8TF72 AL390961.2-201ENST00000454991 472 ntTSL 3 BASIC13.63□□□□□ -0.23
SHROOM3Q8TF72 AC008026.2-201ENST00000495438 348 ntBASIC13.63□□□□□ -0.23
SHROOM3Q8TF72 AC122719.1-201ENST00000507989 559 ntTSL 4 BASIC13.63□□□□□ -0.23
SHROOM3Q8TF72 TRPC7-AS1-201ENST00000514459 460 ntTSL 3 BASIC13.63□□□□□ -0.23
SHROOM3Q8TF72 SRP19-206ENST00000515463 660 ntTSL 3 BASIC13.63□□□□□ -0.23
SHROOM3Q8TF72 AC003070.1-201ENST00000592389 457 ntTSL 2 BASIC13.63□□□□□ -0.23
SHROOM3Q8TF72 AL627230.2-201ENST00000613254 655 ntBASIC13.63□□□□□ -0.23
SHROOM3Q8TF72 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
SHROOM3Q8TF72 CSTF2-203ENST00000415585 2074 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
SHROOM3Q8TF72 NR1H4-203ENST00000392986 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SHROOM3Q8TF72 CALHM1-201ENST00000329905 3053 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SHROOM3Q8TF72 ACAN-209ENST00000617301 8669 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
SHROOM3Q8TF72 ZBTB1-201ENST00000358738 4119 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
SHROOM3Q8TF72 ZFHX4-AS1-201ENST00000518143 1711 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
SHROOM3Q8TF72 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC13.63□□□□□ -0.23
SHROOM3Q8TF72 RNF121-211ENST00000530137 2202 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
SHROOM3Q8TF72 RSPH4A-202ENST00000368580 1410 ntTSL 5 BASIC13.63□□□□□ -0.23
SHROOM3Q8TF72 CNMD-203ENST00000448904 1444 ntAPPRIS ALT1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SHROOM3Q8TF72 ENOX1-201ENST00000261488 2982 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SHROOM3Q8TF72 CARS-AS1-201ENST00000499962 2664 ntTSL 2 BASIC13.63□□□□□ -0.23
SHROOM3Q8TF72 SERPINB1-201ENST00000380739 2619 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SHROOM3Q8TF72 SRRM1-201ENST00000323848 4011 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
SHROOM3Q8TF72 ZNF436-AS1-201ENST00000335648 2547 ntBASIC13.63□□□□□ -0.23
SHROOM3Q8TF72 VILL-201ENST00000283713 2970 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SHROOM3Q8TF72 AC092902.2-210ENST00000468859 1996 ntTSL 2 BASIC13.63□□□□□ -0.23
SHROOM3Q8TF72 MYH14-201ENST00000262269 3848 ntTSL 5 BASIC13.63□□□□□ -0.23
SHROOM3Q8TF72 DYNLT1-201ENST00000367085 774 ntTSL 2 BASIC13.63□□□□□ -0.23
SHROOM3Q8TF72 CASP8-206ENST00000392258 1060 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 60.3 ms