Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 SULT1A2-201ENST00000335715 1090 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL6A3P12111 VSTM1-202ENST00000366170 654 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
COL6A3P12111 PSG5-207ENST00000407568 1064 ntTSL 2 BASIC13.28□□□□□ -0.28
COL6A3P12111 LINC00189-201ENST00000420364 989 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
COL6A3P12111 AC007849.2-201ENST00000484597 471 ntBASIC13.28□□□□□ -0.28
COL6A3P12111 HINT1-204ENST00000506908 681 ntTSL 2 BASIC13.28□□□□□ -0.28
COL6A3P12111 AC016924.1-201ENST00000511512 501 ntTSL 3 BASIC13.28□□□□□ -0.28
COL6A3P12111 SELENOS-207ENST00000531964 764 ntTSL 3 BASIC13.28□□□□□ -0.28
COL6A3P12111 AL359220.1-201ENST00000554086 781 ntTSL 3 BASIC13.28□□□□□ -0.28
COL6A3P12111 DNM1P38-201ENST00000560794 433 ntBASIC13.28□□□□□ -0.28
COL6A3P12111 AC103876.1-203ENST00000565495 290 ntTSL 5 BASIC13.28□□□□□ -0.28
COL6A3P12111 AL138689.1-201ENST00000614612 668 ntBASIC13.28□□□□□ -0.28
COL6A3P12111 DDX41-219ENST00000629036 606 ntTSL 4 BASIC13.28□□□□□ -0.28
COL6A3P12111 IDH1-203ENST00000415913 2441 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL6A3P12111 PPP3CA-202ENST00000394853 3604 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
COL6A3P12111 AC090403.1-201ENST00000584546 1352 ntTSL 2 BASIC13.28□□□□□ -0.28
COL6A3P12111 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
COL6A3P12111 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC13.28□□□□□ -0.28
COL6A3P12111 CDC16-201ENST00000252457 2034 ntAPPRIS ALT1 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL6A3P12111 CDC16-205ENST00000375308 2034 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
COL6A3P12111 IP6K3-202ENST00000451316 2012 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
COL6A3P12111 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL6A3P12111 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL6A3P12111 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
COL6A3P12111 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
COL6A3P12111 MIRLET7E-201ENST00000362102 79 ntBASIC13.28□□□□□ -0.28
COL6A3P12111 AL049597.1-201ENST00000447415 555 ntBASIC13.28□□□□□ -0.28
COL6A3P12111 RN7SL645P-201ENST00000496148 269 ntBASIC13.28□□□□□ -0.28
COL6A3P12111 AP000911.1-204ENST00000533091 571 ntTSL 4 BASIC13.28□□□□□ -0.28
COL6A3P12111 TMEM106A-201ENST00000536052 1181 ntTSL 2 BASIC13.28□□□□□ -0.28
COL6A3P12111 SP6-202ENST00000536300 3848 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
COL6A3P12111 TESPA1-202ENST00000449076 2010 ntAPPRIS P3 TSL 2 BASIC13.28□□□□□ -0.28
COL6A3P12111 BICDL2-204ENST00000573514 3519 ntTSL 2 BASIC13.28□□□□□ -0.28
COL6A3P12111 CDC42-202ENST00000344548 2256 ntAPPRIS ALT1 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL6A3P12111 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC13.28□□□□□ -0.28
COL6A3P12111 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC13.28□□□□□ -0.28
COL6A3P12111 LIPG-205ENST00000580036 1453 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
COL6A3P12111 HOXA1-202ENST00000355633 2016 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
COL6A3P12111 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
COL6A3P12111 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC13.28□□□□□ -0.28
COL6A3P12111 OR8J3-201ENST00000301529 948 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
COL6A3P12111 DPM1-203ENST00000371588 1075 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL6A3P12111 MGST1-204ENST00000396209 979 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
COL6A3P12111 AC005587.1-201ENST00000401879 592 ntBASIC13.28□□□□□ -0.28
COL6A3P12111 FRG2FP-202ENST00000419104 559 ntTSL 4 BASIC13.28□□□□□ -0.28
COL6A3P12111 BANF1P4-201ENST00000420029 270 ntBASIC13.28□□□□□ -0.28
COL6A3P12111 AC098934.2-202ENST00000438944 1033 ntBASIC13.28□□□□□ -0.28
COL6A3P12111 AC007952.3-203ENST00000439868 392 ntTSL 5 BASIC13.28□□□□□ -0.28
COL6A3P12111 AC106017.1-203ENST00000447506 392 ntTSL 5 BASIC13.28□□□□□ -0.28
COL6A3P12111 RN7SL317P-201ENST00000497408 329 ntBASIC13.28□□□□□ -0.28
COL6A3P12111 SNORA76.1-201ENST00000516313 135 ntBASIC13.28□□□□□ -0.28
COL6A3P12111 AC124301.2-201ENST00000529781 556 ntTSL 2 BASIC13.28□□□□□ -0.28
COL6A3P12111 AC074032.1-201ENST00000548468 698 ntTSL 3 BASIC13.28□□□□□ -0.28
COL6A3P12111 AC124947.1-201ENST00000552835 814 ntTSL 3 BASIC13.28□□□□□ -0.28
COL6A3P12111 AL118557.1-201ENST00000554408 440 ntBASIC13.28□□□□□ -0.28
COL6A3P12111 ACSM5-205ENST00000575070 856 ntTSL 3 BASIC13.28□□□□□ -0.28
COL6A3P12111 AP000322.2-201ENST00000608289 510 ntBASIC13.28□□□□□ -0.28
COL6A3P12111 AP000553.4-201ENST00000641967 471 ntBASIC13.28□□□□□ -0.28
COL6A3P12111 TCAF1P1-201ENST00000414990 2232 ntBASIC13.28□□□□□ -0.28
COL6A3P12111 UGT3A1-203ENST00000503189 1902 ntTSL 2 BASIC13.28□□□□□ -0.28
COL6A3P12111 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC13.27□□□□□ -0.28
COL6A3P12111 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
COL6A3P12111 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC13.27□□□□□ -0.28
COL6A3P12111 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
COL6A3P12111 MANEA-AS1-201ENST00000564541 2268 ntBASIC13.27□□□□□ -0.28
COL6A3P12111 AC063952.1-201ENST00000637360 2666 ntTSL 3 BASIC13.27□□□□□ -0.28
COL6A3P12111 MAGEB1-202ENST00000397548 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
COL6A3P12111 C3orf18-206ENST00000449241 2365 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
COL6A3P12111 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
COL6A3P12111 NCR3-203ENST00000376072 875 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
COL6A3P12111 CD74-203ENST00000377795 1138 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
COL6A3P12111 AL049795.1-202ENST00000421616 786 ntTSL 3 BASIC13.27□□□□□ -0.28
COL6A3P12111 LINC01046-201ENST00000443719 405 ntTSL 3 BASIC13.27□□□□□ -0.28
COL6A3P12111 LINC01231-201ENST00000452746 886 ntTSL 3 BASIC13.27□□□□□ -0.28
COL6A3P12111 ADCY10-203ENST00000476818 703 ntTSL 3 BASIC13.27□□□□□ -0.28
COL6A3P12111 AC125494.1-202ENST00000586338 723 ntTSL 5 BASIC13.27□□□□□ -0.28
COL6A3P12111 AC123912.4-201ENST00000596996 1178 ntTSL 2 BASIC13.27□□□□□ -0.28
COL6A3P12111 AL117190.3-201ENST00000621821 87 ntBASIC13.27□□□□□ -0.28
COL6A3P12111 AL445250.1-205ENST00000641631 1094 ntBASIC13.27□□□□□ -0.28
COL6A3P12111 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.28
COL6A3P12111 PSAP-202ENST00000394936 2872 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.28
COL6A3P12111 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC13.27□□□□□ -0.28
COL6A3P12111 LINC01257-201ENST00000376678 2473 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
COL6A3P12111 FGD5P1-202ENST00000614866 2498 ntBASIC13.27□□□□□ -0.29
COL6A3P12111 YWHAQ-202ENST00000381844 2216 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
COL6A3P12111 AP000866.2-201ENST00000504932 1493 ntTSL 2 BASIC13.27□□□□□ -0.29
COL6A3P12111 SLC29A4-201ENST00000297195 2839 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
COL6A3P12111 INTS4P1-203ENST00000641008 3683 ntBASIC13.27□□□□□ -0.29
COL6A3P12111 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
COL6A3P12111 SLC4A11-207ENST00000539553 2832 ntAPPRIS ALT2 TSL 2 BASIC13.27□□□□□ -0.29
COL6A3P12111 TUNAR-201ENST00000503525 3197 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
COL6A3P12111 ZNF805-202ENST00000414468 1884 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
COL6A3P12111 OR10V1-201ENST00000307552 930 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
COL6A3P12111 REG1CP-207ENST00000450249 569 ntTSL 4 BASIC13.27□□□□□ -0.29
COL6A3P12111 GPAA1P1-201ENST00000453019 931 ntBASIC13.27□□□□□ -0.29
COL6A3P12111 PIK3CDP1-201ENST00000454229 922 ntBASIC13.27□□□□□ -0.29
COL6A3P12111 PTPN20-219ENST00000508602 742 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
COL6A3P12111 PTPN20-221ENST00000509599 945 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
COL6A3P12111 PTPN20-222ENST00000509774 788 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
COL6A3P12111 PTPN20-223ENST00000509900 693 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 69.6 ms