Protein–RNA interactions for Protein: Q9C0C7

AMBRA1, Activating molecule in BECN1-regulated autophagy protein 1, humanhuman

Predictions only

Length 1,298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AMBRA1Q9C0C7 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 C7orf57-201ENST00000348904 2125 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 FAM163B-201ENST00000356873 1131 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 TRMT1-202ENST00000357720 2142 ntAPPRIS P3 TSL 2 BASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 HINT2P1-201ENST00000419438 481 ntBASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 AC011995.2-201ENST00000452701 574 ntTSL 4 BASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 NDUFB10P1-201ENST00000567319 521 ntBASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 NRXN1-207ENST00000404971 7578 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 PPP1R11-204ENST00000376769 1689 ntTSL 2 BASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 CIZ1-205ENST00000372948 2858 ntAPPRIS ALT2 TSL 2 BASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 RBM39-243ENST00000528062 2421 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 FAM184A-211ENST00000521531 3244 ntTSL 5 BASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 CU639417.6-202ENST00000624872 3241 ntTSL 5 BASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 ESPNL-202ENST00000409169 4441 ntTSL 5 BASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 TBC1D27-202ENST00000424239 1573 ntBASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 ERG-211ENST00000453032 1595 ntTSL 2 BASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 ABCB9-201ENST00000280560 3517 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 POM121-205ENST00000627934 5480 ntAPPRIS P3 TSL 5 BASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 TMEM182-202ENST00000409528 3112 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 KCNK10-202ENST00000319231 2725 ntAPPRIS P4 TSL 1 (best) BASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 LRCH3-206ENST00000438796 7394 ntAPPRIS P5 TSL 2 BASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 RPL31-207ENST00000409711 2328 ntTSL 2 BASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 ARHGAP33-204ENST00000378944 4219 ntAPPRIS ALT2 TSL 2 BASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 MINDY1-205ENST00000493834 1546 ntTSL 2 BASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 GYG2-204ENST00000381163 3393 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 ANK1-205ENST00000347528 8237 ntAPPRIS P4 TSL 1 (best) BASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 AC099786.2-201ENST00000427892 2203 ntTSL 2 BASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 SMC6-201ENST00000351948 5173 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 DNAJC13-201ENST00000260818 7730 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 KCNMA1-210ENST00000404771 4014 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 RBM22P2-201ENST00000393978 1814 ntBASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 NLRP7-202ENST00000340844 3250 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 TRIM37-203ENST00000393066 3622 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
AMBRA1Q9C0C7 TOX2-203ENST00000372999 2519 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
AMBRA1Q9C0C7 GPR55-205ENST00000622008 2526 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
AMBRA1Q9C0C7 ALDOA-202ENST00000395240 1447 ntAPPRIS ALT1 TSL 5 BASIC12.71□□□□□ -0.37
AMBRA1Q9C0C7 LINC02347-203ENST00000540774 1442 ntTSL 5 BASIC12.71□□□□□ -0.37
AMBRA1Q9C0C7 AP002986.1-201ENST00000602376 1763 ntTSL 5 BASIC12.71□□□□□ -0.37
AMBRA1Q9C0C7 EPS8L3-201ENST00000361852 2130 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
AMBRA1Q9C0C7 SPCS3-201ENST00000503362 4571 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
AMBRA1Q9C0C7 SESN2-201ENST00000253063 3453 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
AMBRA1Q9C0C7 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC12.71□□□□□ -0.37
AMBRA1Q9C0C7 PYGL-206ENST00000544180 2696 ntTSL 2 BASIC12.71□□□□□ -0.37
AMBRA1Q9C0C7 ABCB8-202ENST00000358849 4683 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
AMBRA1Q9C0C7 ADM2-202ENST00000395738 4276 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
AMBRA1Q9C0C7 CST3-203ENST00000398411 3286 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
AMBRA1Q9C0C7 GNPNAT1-201ENST00000216410 3860 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
AMBRA1Q9C0C7 ZNF287-202ENST00000395825 3208 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
AMBRA1Q9C0C7 SLCO2A1-208ENST00000493729 1918 ntTSL 5 BASIC12.71□□□□□ -0.37
AMBRA1Q9C0C7 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
AMBRA1Q9C0C7 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
AMBRA1Q9C0C7 NCR3-202ENST00000376071 541 ntTSL 5 BASIC12.71□□□□□ -0.37
AMBRA1Q9C0C7 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC12.71□□□□□ -0.37
AMBRA1Q9C0C7 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC12.71□□□□□ -0.37
AMBRA1Q9C0C7 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC12.71□□□□□ -0.37
AMBRA1Q9C0C7 KRTAP19-9P-201ENST00000421795 191 ntBASIC12.71□□□□□ -0.37
AMBRA1Q9C0C7 AL596276.2-201ENST00000447525 331 ntBASIC12.71□□□□□ -0.37
AMBRA1Q9C0C7 AC005077.2-201ENST00000449786 690 ntBASIC12.71□□□□□ -0.37
AMBRA1Q9C0C7 SPTLC1P5-201ENST00000450718 252 ntBASIC12.71□□□□□ -0.37
AMBRA1Q9C0C7 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
AMBRA1Q9C0C7 ADM-202ENST00000524948 584 ntTSL 2 BASIC12.71□□□□□ -0.37
AMBRA1Q9C0C7 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC12.71□□□□□ -0.37
AMBRA1Q9C0C7 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC12.71□□□□□ -0.37
AMBRA1Q9C0C7 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC12.71□□□□□ -0.37
AMBRA1Q9C0C7 ACTG1P17-201ENST00000558391 1119 ntBASIC12.71□□□□□ -0.37
AMBRA1Q9C0C7 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC12.71□□□□□ -0.37
AMBRA1Q9C0C7 RN7SL774P-201ENST00000577467 290 ntBASIC12.71□□□□□ -0.37
AMBRA1Q9C0C7 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC12.71□□□□□ -0.37
AMBRA1Q9C0C7 AP001462.1-201ENST00000594089 452 ntBASIC12.71□□□□□ -0.37
AMBRA1Q9C0C7 AC011495.2-201ENST00000600665 360 ntTSL 5 BASIC12.71□□□□□ -0.37
AMBRA1Q9C0C7 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
AMBRA1Q9C0C7 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC12.71□□□□□ -0.37
AMBRA1Q9C0C7 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC12.71□□□□□ -0.37
AMBRA1Q9C0C7 ELAVL1-201ENST00000407627 6015 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
AMBRA1Q9C0C7 MGAT4EP-201ENST00000330493 2810 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
AMBRA1Q9C0C7 CPT1C-204ENST00000405931 2785 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
AMBRA1Q9C0C7 ZMIZ2-215ENST00000615423 2772 ntTSL 5 BASIC12.71□□□□□ -0.38
AMBRA1Q9C0C7 HNRNPLP1-201ENST00000421896 1501 ntBASIC12.71□□□□□ -0.38
AMBRA1Q9C0C7 CCDC163-203ENST00000626657 1526 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
AMBRA1Q9C0C7 GLIS3-201ENST00000324333 6667 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
AMBRA1Q9C0C7 FHOD3-207ENST00000591635 3035 ntTSL 5 BASIC12.71□□□□□ -0.38
AMBRA1Q9C0C7 NLGN3-206ENST00000612180 3319 ntTSL 5 BASIC12.71□□□□□ -0.38
AMBRA1Q9C0C7 FGFRL1-202ENST00000398484 3639 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.38
AMBRA1Q9C0C7 GATC-203ENST00000551765 4244 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 71.6 ms