Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 CCDC149-208ENST00000635206 2362 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
HMGB1P09429 GSE1-203ENST00000405402 4366 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
HMGB1P09429 FAM13B-203ENST00000425075 3098 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
HMGB1P09429 DDC-201ENST00000357936 1938 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
HMGB1P09429 CPA5-203ENST00000461828 1794 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
HMGB1P09429 ARHGEF9-220ENST00000635729 1761 ntTSL 5 BASIC15.98■□□□□ 0.15
HMGB1P09429 DSCAM-AS1-202ENST00000427451 1640 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
HMGB1P09429 CSF2RA-219ENST00000501036 1622 ntTSL 2 BASIC15.97■□□□□ 0.15
HMGB1P09429 BIVM-202ENST00000448849 3198 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
HMGB1P09429 XG-201ENST00000381174 2315 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
HMGB1P09429 ANKDD1A-207ENST00000496660 1477 ntTSL 2 BASIC15.97■□□□□ 0.15
HMGB1P09429 DPYSL2-204ENST00000521913 4805 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
HMGB1P09429 OR2V1-204ENST00000641551 2423 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
HMGB1P09429 TRIO-202ENST00000344204 11100 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
HMGB1P09429 DPH2-202ENST00000396758 1738 ntTSL 3 BASIC15.97■□□□□ 0.15
HMGB1P09429 LPCAT4-209ENST00000617710 1719 ntTSL 5 BASIC15.97■□□□□ 0.15
HMGB1P09429 CC2D1B-201ENST00000284376 3377 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
HMGB1P09429 CHMP7-201ENST00000313219 3367 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
HMGB1P09429 NSD2-203ENST00000382888 2666 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
HMGB1P09429 GHITM-201ENST00000372134 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
HMGB1P09429 ARMC5-201ENST00000268314 3612 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
HMGB1P09429 FAM155B-201ENST00000252338 4013 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
HMGB1P09429 ZC3H18-201ENST00000301011 3729 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
HMGB1P09429 PAEP-201ENST00000277508 821 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
HMGB1P09429 CASP8-206ENST00000392258 1060 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
HMGB1P09429 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC15.97■□□□□ 0.15
HMGB1P09429 ANKRD2-204ENST00000455090 1072 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
HMGB1P09429 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC15.97■□□□□ 0.15
HMGB1P09429 ATP1A4-205ENST00000470705 886 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
HMGB1P09429 RPS23-204ENST00000507980 836 ntTSL 2 BASIC15.97■□□□□ 0.15
HMGB1P09429 FAM213AP2-201ENST00000521579 683 ntBASIC15.97■□□□□ 0.15
HMGB1P09429 EMP2-203ENST00000536829 781 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
HMGB1P09429 C2orf27AP1-201ENST00000618128 586 ntBASIC15.97■□□□□ 0.15
HMGB1P09429 RPL13A-213ENST00000621674 1098 ntTSL 5 BASIC15.97■□□□□ 0.15
HMGB1P09429 AC005618.3-201ENST00000624928 458 ntBASIC15.97■□□□□ 0.15
HMGB1P09429 PSMD5-208ENST00000625444 219 ntTSL 5 BASIC15.97■□□□□ 0.15
HMGB1P09429 DPP8-202ENST00000321147 3125 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
HMGB1P09429 ASB2-201ENST00000315988 2743 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
HMGB1P09429 NRXN1-222ENST00000625672 8113 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
HMGB1P09429 C22orf34-204ENST00000414287 2197 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
HMGB1P09429 SGMS1-203ENST00000429490 3634 ntTSL 5 BASIC15.97■□□□□ 0.15
HMGB1P09429 USP19-207ENST00000434032 4677 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
HMGB1P09429 SPPL2B-209ENST00000613503 3456 ntAPPRIS P4 TSL 1 (best) BASIC15.97■□□□□ 0.15
HMGB1P09429 GTF2IRD1-202ENST00000424337 3077 ntAPPRIS ALT1 TSL 1 (best) BASIC15.97■□□□□ 0.15
HMGB1P09429 PIM1-201ENST00000373509 2650 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
HMGB1P09429 PDXDC1-218ENST00000627450 2683 ntTSL 2 BASIC15.97■□□□□ 0.15
HMGB1P09429 NINL-203ENST00000422516 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
HMGB1P09429 TGIF2-201ENST00000373872 3406 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
HMGB1P09429 AMER1-202ENST00000374869 3688 ntTSL 5 BASIC15.97■□□□□ 0.15
HMGB1P09429 CAND2-204ENST00000456430 4573 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
HMGB1P09429 DLX1-201ENST00000341900 2130 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
HMGB1P09429 C1S-202ENST00000360817 2635 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
HMGB1P09429 ZNF621-204ENST00000431278 2613 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
HMGB1P09429 RIN3-212ENST00000620541 3617 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
HMGB1P09429 MUC20-203ENST00000436408 2463 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
HMGB1P09429 STRA6-202ENST00000395105 2800 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
HMGB1P09429 DDX12P-201ENST00000432996 2947 ntBASIC15.96■□□□□ 0.15
HMGB1P09429 ELMOD3-201ENST00000315658 2685 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
HMGB1P09429 HIST2H2BE-201ENST00000369155 2194 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
HMGB1P09429 ACVR1B-202ENST00000415850 1665 ntTSL 2 BASIC15.96■□□□□ 0.15
HMGB1P09429 MGLL-202ENST00000398101 1414 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
HMGB1P09429 LINC00563-201ENST00000566370 1400 ntBASIC15.96■□□□□ 0.15
HMGB1P09429 IKZF1-203ENST00000346667 5376 ntTSL 5 BASIC15.96■□□□□ 0.15
HMGB1P09429 UBE2I-204ENST00000397515 3109 ntAPPRIS P1 TSL 3 BASIC15.96■□□□□ 0.15
HMGB1P09429 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
HMGB1P09429 COA6-203ENST00000366615 710 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
HMGB1P09429 CLIC1-209ENST00000395892 1197 ntAPPRIS P1 TSL 3 BASIC15.96■□□□□ 0.15
HMGB1P09429 LINP1-201ENST00000417112 917 ntTSL 2 BASIC15.96■□□□□ 0.15
HMGB1P09429 AP001628.2-201ENST00000420273 784 ntTSL 2 BASIC15.96■□□□□ 0.15
HMGB1P09429 AL662797.1-201ENST00000442852 799 ntTSL 3 BASIC15.96■□□□□ 0.15
HMGB1P09429 AC022494.1-201ENST00000466044 728 ntBASIC15.96■□□□□ 0.15
HMGB1P09429 AP002803.1-201ENST00000528836 498 ntBASIC15.96■□□□□ 0.15
HMGB1P09429 AL161668.2-201ENST00000531638 492 ntTSL 5 BASIC15.96■□□□□ 0.15
HMGB1P09429 KCCAT198-201ENST00000549251 549 ntTSL 4 BASIC15.96■□□□□ 0.15
HMGB1P09429 RNASEK-204ENST00000552039 591 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
HMGB1P09429 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC15.96■□□□□ 0.15
HMGB1P09429 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
HMGB1P09429 RPL17P45-201ENST00000586289 509 ntBASIC15.96■□□□□ 0.15
HMGB1P09429 SMIM22-206ENST00000589327 629 ntAPPRIS P4 TSL 1 (best) BASIC15.96■□□□□ 0.15
HMGB1P09429 RNASEK-210ENST00000593646 566 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
HMGB1P09429 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC15.96■□□□□ 0.15
HMGB1P09429 AC137723.2-201ENST00000623540 398 ntBASIC15.96■□□□□ 0.15
HMGB1P09429 PFDN5-220ENST00000628881 231 ntTSL 3 BASIC15.96■□□□□ 0.15
HMGB1P09429 ALDOA-229ENST00000636698 420 ntTSL 3 BASIC15.96■□□□□ 0.15
HMGB1P09429 AL805961.1-201ENST00000642026 753 ntBASIC15.96■□□□□ 0.15
HMGB1P09429 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
HMGB1P09429 SLC2A14-213ENST00000539924 1873 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.15
HMGB1P09429 PRPF40B-209ENST00000548825 3307 ntAPPRIS P2 TSL 5 BASIC15.96■□□□□ 0.15
HMGB1P09429 MAGED4-201ENST00000375626 2495 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
HMGB1P09429 NUDT9-203ENST00000473942 2458 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
HMGB1P09429 AC244021.1-201ENST00000417218 3662 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
HMGB1P09429 LINC00865-202ENST00000448963 4272 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
HMGB1P09429 CLEC10A-202ENST00000416562 1646 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
HMGB1P09429 CICP20-201ENST00000443330 2801 ntBASIC15.96■□□□□ 0.15
HMGB1P09429 MAGED4B-201ENST00000335504 2578 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
HMGB1P09429 AL356130.1-201ENST00000620188 1965 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
HMGB1P09429 PASK-204ENST00000405260 4942 ntAPPRIS P3 TSL 5 BASIC15.96■□□□□ 0.15
HMGB1P09429 ADCY4-202ENST00000418030 3353 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
HMGB1P09429 SLC25A19-205ENST00000442286 1496 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.14
HMGB1P09429 COL6A2-203ENST00000397763 3101 ntTSL 5 BASIC15.96■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms