Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
SIX2Q9NPC8 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
SIX2Q9NPC8 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
SIX2Q9NPC8 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
SIX2Q9NPC8 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC23.97■■□□□ 1.43
SIX2Q9NPC8 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC23.97■■□□□ 1.43
SIX2Q9NPC8 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC23.97■■□□□ 1.43
SIX2Q9NPC8 C17orf82-201ENST00000623772 1530 ntBASIC23.97■■□□□ 1.43
SIX2Q9NPC8 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
SIX2Q9NPC8 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC23.96■■□□□ 1.43
SIX2Q9NPC8 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC23.96■■□□□ 1.43
SIX2Q9NPC8 ESRRAP2-201ENST00000418437 1549 ntBASIC23.96■■□□□ 1.43
SIX2Q9NPC8 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
SIX2Q9NPC8 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC23.96■■□□□ 1.43
SIX2Q9NPC8 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC23.96■■□□□ 1.43
SIX2Q9NPC8 MIR6724-1-201ENST00000616420 92 ntBASIC23.96■■□□□ 1.43
SIX2Q9NPC8 MIR6724-2-201ENST00000616483 92 ntBASIC23.96■■□□□ 1.43
SIX2Q9NPC8 MIR6724-4-201ENST00000617390 92 ntBASIC23.96■■□□□ 1.43
SIX2Q9NPC8 MIR6724-3-201ENST00000622482 92 ntBASIC23.96■■□□□ 1.43
SIX2Q9NPC8 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC23.96■■□□□ 1.43
SIX2Q9NPC8 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
SIX2Q9NPC8 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.43
SIX2Q9NPC8 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.43
SIX2Q9NPC8 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.43
SIX2Q9NPC8 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
SIX2Q9NPC8 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
SIX2Q9NPC8 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC23.95■■□□□ 1.42
SIX2Q9NPC8 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
SIX2Q9NPC8 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC23.95■■□□□ 1.42
SIX2Q9NPC8 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC23.95■■□□□ 1.42
SIX2Q9NPC8 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC23.95■■□□□ 1.42
SIX2Q9NPC8 AC087742.1-201ENST00000575880 1738 ntBASIC23.95■■□□□ 1.42
SIX2Q9NPC8 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC23.95■■□□□ 1.42
SIX2Q9NPC8 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC23.95■■□□□ 1.42
SIX2Q9NPC8 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
SIX2Q9NPC8 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC23.94■■□□□ 1.42
SIX2Q9NPC8 LSR-203ENST00000360798 1963 ntTSL 2 BASIC23.94■■□□□ 1.42
SIX2Q9NPC8 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC23.94■■□□□ 1.42
SIX2Q9NPC8 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
SIX2Q9NPC8 GUSBP5-201ENST00000418136 578 ntBASIC23.94■■□□□ 1.42
SIX2Q9NPC8 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC23.94■■□□□ 1.42
SIX2Q9NPC8 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC23.94■■□□□ 1.42
SIX2Q9NPC8 AC127496.7-201ENST00000625110 1798 ntBASIC23.93■■□□□ 1.42
SIX2Q9NPC8 ECEL1P1-201ENST00000373592 1742 ntBASIC23.93■■□□□ 1.42
SIX2Q9NPC8 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
SIX2Q9NPC8 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
SIX2Q9NPC8 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC23.93■■□□□ 1.42
SIX2Q9NPC8 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
SIX2Q9NPC8 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC23.93■■□□□ 1.42
SIX2Q9NPC8 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC23.92■■□□□ 1.42
SIX2Q9NPC8 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC23.92■■□□□ 1.42
SIX2Q9NPC8 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC23.92■■□□□ 1.42
SIX2Q9NPC8 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
SIX2Q9NPC8 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC23.92■■□□□ 1.42
SIX2Q9NPC8 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC23.92■■□□□ 1.42
SIX2Q9NPC8 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
SIX2Q9NPC8 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC23.92■■□□□ 1.42
SIX2Q9NPC8 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC23.92■■□□□ 1.42
SIX2Q9NPC8 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
SIX2Q9NPC8 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
SIX2Q9NPC8 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
SIX2Q9NPC8 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
SIX2Q9NPC8 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC23.91■■□□□ 1.42
SIX2Q9NPC8 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC23.91■■□□□ 1.42
SIX2Q9NPC8 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
SIX2Q9NPC8 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
SIX2Q9NPC8 VGF-203ENST00000611537 1622 ntTSL 5 BASIC23.91■■□□□ 1.42
SIX2Q9NPC8 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC23.91■■□□□ 1.42
SIX2Q9NPC8 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
SIX2Q9NPC8 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC23.91■■□□□ 1.42
SIX2Q9NPC8 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC23.91■■□□□ 1.42
SIX2Q9NPC8 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
SIX2Q9NPC8 LINC00526-201ENST00000581067 1875 ntBASIC23.9■■□□□ 1.42
SIX2Q9NPC8 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC23.9■■□□□ 1.42
SIX2Q9NPC8 KRT16P3-201ENST00000439127 1283 ntBASIC23.9■■□□□ 1.42
SIX2Q9NPC8 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
SIX2Q9NPC8 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC23.9■■□□□ 1.42
SIX2Q9NPC8 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC23.9■■□□□ 1.42
SIX2Q9NPC8 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
SIX2Q9NPC8 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
SIX2Q9NPC8 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
SIX2Q9NPC8 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC23.9■■□□□ 1.42
SIX2Q9NPC8 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
SIX2Q9NPC8 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
SIX2Q9NPC8 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
SIX2Q9NPC8 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC23.89■■□□□ 1.42
SIX2Q9NPC8 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC23.89■■□□□ 1.41
SIX2Q9NPC8 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC23.89■■□□□ 1.41
SIX2Q9NPC8 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
SIX2Q9NPC8 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
SIX2Q9NPC8 STK25-234ENST00000535007 2459 ntTSL 2 BASIC23.89■■□□□ 1.41
SIX2Q9NPC8 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC23.89■■□□□ 1.41
SIX2Q9NPC8 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC23.89■■□□□ 1.41
SIX2Q9NPC8 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC23.89■■□□□ 1.41
SIX2Q9NPC8 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
SIX2Q9NPC8 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC23.88■■□□□ 1.41
SIX2Q9NPC8 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
SIX2Q9NPC8 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
SIX2Q9NPC8 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC23.87■■□□□ 1.41
SIX2Q9NPC8 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC23.87■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms