Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
TM9SF3Q9HD45 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC22.21■■□□□ 1.15
TM9SF3Q9HD45 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
TM9SF3Q9HD45 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
TM9SF3Q9HD45 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC22.21■■□□□ 1.15
TM9SF3Q9HD45 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
TM9SF3Q9HD45 AL358852.1-201ENST00000623174 1268 ntBASIC22.21■■□□□ 1.15
TM9SF3Q9HD45 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC22.21■■□□□ 1.15
TM9SF3Q9HD45 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
TM9SF3Q9HD45 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC22.21■■□□□ 1.15
TM9SF3Q9HD45 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
TM9SF3Q9HD45 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC22.21■■□□□ 1.15
TM9SF3Q9HD45 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC22.2■■□□□ 1.15
TM9SF3Q9HD45 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC22.2■■□□□ 1.14
TM9SF3Q9HD45 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC22.2■■□□□ 1.14
TM9SF3Q9HD45 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC22.2■■□□□ 1.14
TM9SF3Q9HD45 KRT18P5-201ENST00000436075 1291 ntBASIC22.2■■□□□ 1.14
TM9SF3Q9HD45 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
TM9SF3Q9HD45 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC22.2■■□□□ 1.14
TM9SF3Q9HD45 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC22.2■■□□□ 1.14
TM9SF3Q9HD45 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
TM9SF3Q9HD45 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
TM9SF3Q9HD45 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
TM9SF3Q9HD45 RAB43-208ENST00000615093 783 ntTSL 5 BASIC22.2■■□□□ 1.14
TM9SF3Q9HD45 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC22.2■■□□□ 1.14
TM9SF3Q9HD45 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC22.2■■□□□ 1.14
TM9SF3Q9HD45 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC22.2■■□□□ 1.14
TM9SF3Q9HD45 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
TM9SF3Q9HD45 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC22.2■■□□□ 1.14
TM9SF3Q9HD45 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
TM9SF3Q9HD45 AC027612.3-201ENST00000413684 1047 ntBASIC22.19■■□□□ 1.14
TM9SF3Q9HD45 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
TM9SF3Q9HD45 AC022517.1-201ENST00000592429 346 ntBASIC22.19■■□□□ 1.14
TM9SF3Q9HD45 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
TM9SF3Q9HD45 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC22.19■■□□□ 1.14
TM9SF3Q9HD45 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
TM9SF3Q9HD45 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
TM9SF3Q9HD45 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
TM9SF3Q9HD45 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
TM9SF3Q9HD45 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
TM9SF3Q9HD45 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
TM9SF3Q9HD45 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
TM9SF3Q9HD45 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC22.18■■□□□ 1.14
TM9SF3Q9HD45 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
TM9SF3Q9HD45 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC22.18■■□□□ 1.14
TM9SF3Q9HD45 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC22.18■■□□□ 1.14
TM9SF3Q9HD45 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC22.18■■□□□ 1.14
TM9SF3Q9HD45 MIR572-201ENST00000384983 95 ntBASIC22.18■■□□□ 1.14
TM9SF3Q9HD45 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC22.18■■□□□ 1.14
TM9SF3Q9HD45 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
TM9SF3Q9HD45 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC22.18■■□□□ 1.14
TM9SF3Q9HD45 DUX4L2-201ENST00000561772 1275 ntBASIC22.18■■□□□ 1.14
TM9SF3Q9HD45 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
TM9SF3Q9HD45 IKBKGP1-201ENST00000612193 1073 ntBASIC22.18■■□□□ 1.14
TM9SF3Q9HD45 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC22.18■■□□□ 1.14
TM9SF3Q9HD45 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
TM9SF3Q9HD45 DUX4L6-201ENST00000626483 1275 ntBASIC22.18■■□□□ 1.14
TM9SF3Q9HD45 DUX4L1-201ENST00000627662 1275 ntBASIC22.18■■□□□ 1.14
TM9SF3Q9HD45 DUX4L8-201ENST00000629013 1275 ntBASIC22.18■■□□□ 1.14
TM9SF3Q9HD45 DUX4L3-201ENST00000630187 1275 ntBASIC22.18■■□□□ 1.14
TM9SF3Q9HD45 DUX4L7-201ENST00000630678 1275 ntBASIC22.18■■□□□ 1.14
TM9SF3Q9HD45 DUX4L5-201ENST00000630834 1275 ntBASIC22.18■■□□□ 1.14
TM9SF3Q9HD45 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC22.18■■□□□ 1.14
TM9SF3Q9HD45 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
TM9SF3Q9HD45 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC22.18■■□□□ 1.14
TM9SF3Q9HD45 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
TM9SF3Q9HD45 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
TM9SF3Q9HD45 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
TM9SF3Q9HD45 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC22.17■■□□□ 1.14
TM9SF3Q9HD45 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC22.17■■□□□ 1.14
TM9SF3Q9HD45 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC22.17■■□□□ 1.14
TM9SF3Q9HD45 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
TM9SF3Q9HD45 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
TM9SF3Q9HD45 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC22.17■■□□□ 1.14
TM9SF3Q9HD45 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC22.17■■□□□ 1.14
TM9SF3Q9HD45 AL499627.2-201ENST00000606283 725 ntBASIC22.17■■□□□ 1.14
TM9SF3Q9HD45 MIR6084-201ENST00000622012 110 ntBASIC22.17■■□□□ 1.14
TM9SF3Q9HD45 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC22.17■■□□□ 1.14
TM9SF3Q9HD45 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
TM9SF3Q9HD45 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
TM9SF3Q9HD45 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
TM9SF3Q9HD45 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC22.16■■□□□ 1.14
TM9SF3Q9HD45 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC22.16■■□□□ 1.14
TM9SF3Q9HD45 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
TM9SF3Q9HD45 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
TM9SF3Q9HD45 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
TM9SF3Q9HD45 AC123595.1-201ENST00000440769 1046 ntBASIC22.16■■□□□ 1.14
TM9SF3Q9HD45 AC012414.1-201ENST00000556676 535 ntBASIC22.16■■□□□ 1.14
TM9SF3Q9HD45 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC22.16■■□□□ 1.14
TM9SF3Q9HD45 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
TM9SF3Q9HD45 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC22.15■■□□□ 1.14
TM9SF3Q9HD45 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC22.15■■□□□ 1.14
TM9SF3Q9HD45 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
TM9SF3Q9HD45 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
TM9SF3Q9HD45 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
TM9SF3Q9HD45 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC22.15■■□□□ 1.14
TM9SF3Q9HD45 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC22.15■■□□□ 1.14
TM9SF3Q9HD45 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC22.15■■□□□ 1.14
TM9SF3Q9HD45 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
TM9SF3Q9HD45 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC22.15■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms