Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC19.01■□□□□ 0.63
CHMP1AQ9HD42 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
CHMP1AQ9HD42 WWC2-AS2-201ENST00000578387 2183 ntBASIC19.01■□□□□ 0.63
CHMP1AQ9HD42 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CHMP1AQ9HD42 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CHMP1AQ9HD42 ABHD17AP5-201ENST00000580133 923 ntBASIC19.01■□□□□ 0.63
CHMP1AQ9HD42 AC019171.1-201ENST00000601251 1056 ntBASIC19.01■□□□□ 0.63
CHMP1AQ9HD42 BRD4-212ENST00000630599 726 ntTSL 2 BASIC19.01■□□□□ 0.63
CHMP1AQ9HD42 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC19.01■□□□□ 0.63
CHMP1AQ9HD42 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC19.01■□□□□ 0.63
CHMP1AQ9HD42 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CHMP1AQ9HD42 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CHMP1AQ9HD42 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
CHMP1AQ9HD42 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CHMP1AQ9HD42 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
CHMP1AQ9HD42 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
CHMP1AQ9HD42 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CHMP1AQ9HD42 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CHMP1AQ9HD42 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC19■□□□□ 0.63
CHMP1AQ9HD42 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
CHMP1AQ9HD42 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC19■□□□□ 0.63
CHMP1AQ9HD42 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC19■□□□□ 0.63
CHMP1AQ9HD42 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CHMP1AQ9HD42 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC19■□□□□ 0.63
CHMP1AQ9HD42 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CHMP1AQ9HD42 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CHMP1AQ9HD42 TERT-206ENST00000508104 2486 ntTSL 5 BASIC19■□□□□ 0.63
CHMP1AQ9HD42 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CHMP1AQ9HD42 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC19■□□□□ 0.63
CHMP1AQ9HD42 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC19■□□□□ 0.63
CHMP1AQ9HD42 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CHMP1AQ9HD42 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CHMP1AQ9HD42 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
CHMP1AQ9HD42 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
CHMP1AQ9HD42 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
CHMP1AQ9HD42 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CHMP1AQ9HD42 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CHMP1AQ9HD42 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
CHMP1AQ9HD42 NTF6A-201ENST00000591175 560 ntBASIC18.99■□□□□ 0.63
CHMP1AQ9HD42 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CHMP1AQ9HD42 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC18.99■□□□□ 0.63
CHMP1AQ9HD42 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CHMP1AQ9HD42 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC18.99■□□□□ 0.63
CHMP1AQ9HD42 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CHMP1AQ9HD42 AC007375.3-201ENST00000600936 2314 ntBASIC18.99■□□□□ 0.63
CHMP1AQ9HD42 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC18.98■□□□□ 0.63
CHMP1AQ9HD42 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CHMP1AQ9HD42 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
CHMP1AQ9HD42 H19-210ENST00000439725 1929 ntTSL 2 BASIC18.98■□□□□ 0.63
CHMP1AQ9HD42 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC18.98■□□□□ 0.63
CHMP1AQ9HD42 ECEL1P1-201ENST00000373592 1742 ntBASIC18.98■□□□□ 0.63
CHMP1AQ9HD42 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CHMP1AQ9HD42 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC18.98■□□□□ 0.63
CHMP1AQ9HD42 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
CHMP1AQ9HD42 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC18.98■□□□□ 0.63
CHMP1AQ9HD42 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC18.98■□□□□ 0.63
CHMP1AQ9HD42 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CHMP1AQ9HD42 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHMP1AQ9HD42 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHMP1AQ9HD42 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHMP1AQ9HD42 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHMP1AQ9HD42 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHMP1AQ9HD42 AC120024.1-201ENST00000562672 995 ntBASIC18.97■□□□□ 0.63
CHMP1AQ9HD42 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC18.97■□□□□ 0.63
CHMP1AQ9HD42 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC18.97■□□□□ 0.63
CHMP1AQ9HD42 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHMP1AQ9HD42 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHMP1AQ9HD42 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHMP1AQ9HD42 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC18.97■□□□□ 0.63
CHMP1AQ9HD42 LSR-203ENST00000360798 1963 ntTSL 2 BASIC18.97■□□□□ 0.63
CHMP1AQ9HD42 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHMP1AQ9HD42 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHMP1AQ9HD42 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC18.97■□□□□ 0.63
CHMP1AQ9HD42 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CHMP1AQ9HD42 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHMP1AQ9HD42 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHMP1AQ9HD42 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
CHMP1AQ9HD42 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC18.96■□□□□ 0.63
CHMP1AQ9HD42 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC18.96■□□□□ 0.63
CHMP1AQ9HD42 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHMP1AQ9HD42 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHMP1AQ9HD42 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
CHMP1AQ9HD42 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC18.96■□□□□ 0.63
CHMP1AQ9HD42 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC18.96■□□□□ 0.63
CHMP1AQ9HD42 THA1P-201ENST00000590384 1145 ntBASIC18.96■□□□□ 0.63
CHMP1AQ9HD42 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CHMP1AQ9HD42 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHMP1AQ9HD42 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHMP1AQ9HD42 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CHMP1AQ9HD42 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHMP1AQ9HD42 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CHMP1AQ9HD42 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CHMP1AQ9HD42 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC18.95■□□□□ 0.62
CHMP1AQ9HD42 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CHMP1AQ9HD42 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
CHMP1AQ9HD42 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CHMP1AQ9HD42 LBH-205ENST00000407930 756 ntTSL 2 BASIC18.95■□□□□ 0.62
CHMP1AQ9HD42 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC18.95■□□□□ 0.62
CHMP1AQ9HD42 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
CHMP1AQ9HD42 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms