Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC26.72■■□□□ 1.87
SMC1BQ8NDV3 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
SMC1BQ8NDV3 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC26.72■■□□□ 1.87
SMC1BQ8NDV3 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
SMC1BQ8NDV3 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
SMC1BQ8NDV3 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC26.72■■□□□ 1.87
SMC1BQ8NDV3 RHEB-204ENST00000472642 900 ntTSL 3 BASIC26.72■■□□□ 1.87
SMC1BQ8NDV3 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC26.72■■□□□ 1.87
SMC1BQ8NDV3 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
SMC1BQ8NDV3 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC26.72■■□□□ 1.87
SMC1BQ8NDV3 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
SMC1BQ8NDV3 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC26.71■■□□□ 1.87
SMC1BQ8NDV3 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
SMC1BQ8NDV3 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC26.71■■□□□ 1.87
SMC1BQ8NDV3 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC26.71■■□□□ 1.87
SMC1BQ8NDV3 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC26.71■■□□□ 1.87
SMC1BQ8NDV3 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.87
SMC1BQ8NDV3 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC26.7■■□□□ 1.86
SMC1BQ8NDV3 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC26.7■■□□□ 1.86
SMC1BQ8NDV3 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC26.7■■□□□ 1.86
SMC1BQ8NDV3 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC26.7■■□□□ 1.86
SMC1BQ8NDV3 AC007322.1-201ENST00000426983 750 ntBASIC26.7■■□□□ 1.86
SMC1BQ8NDV3 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC26.7■■□□□ 1.86
SMC1BQ8NDV3 SMUG1P1-201ENST00000590640 811 ntBASIC26.7■■□□□ 1.86
SMC1BQ8NDV3 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
SMC1BQ8NDV3 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC26.7■■□□□ 1.86
SMC1BQ8NDV3 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
SMC1BQ8NDV3 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC26.69■■□□□ 1.86
SMC1BQ8NDV3 AC096887.2-201ENST00000623443 1957 ntBASIC26.69■■□□□ 1.86
SMC1BQ8NDV3 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
SMC1BQ8NDV3 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
SMC1BQ8NDV3 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
SMC1BQ8NDV3 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC26.69■■□□□ 1.86
SMC1BQ8NDV3 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
SMC1BQ8NDV3 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC26.69■■□□□ 1.86
SMC1BQ8NDV3 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
SMC1BQ8NDV3 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
SMC1BQ8NDV3 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC26.69■■□□□ 1.86
SMC1BQ8NDV3 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
SMC1BQ8NDV3 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC26.68■■□□□ 1.86
SMC1BQ8NDV3 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
SMC1BQ8NDV3 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC26.68■■□□□ 1.86
SMC1BQ8NDV3 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC26.68■■□□□ 1.86
SMC1BQ8NDV3 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
SMC1BQ8NDV3 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
SMC1BQ8NDV3 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
SMC1BQ8NDV3 AL596275.1-201ENST00000423464 877 ntBASIC26.67■■□□□ 1.86
SMC1BQ8NDV3 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC26.67■■□□□ 1.86
SMC1BQ8NDV3 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC26.67■■□□□ 1.86
SMC1BQ8NDV3 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC26.67■■□□□ 1.86
SMC1BQ8NDV3 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC26.67■■□□□ 1.86
SMC1BQ8NDV3 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
SMC1BQ8NDV3 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC26.67■■□□□ 1.86
SMC1BQ8NDV3 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC26.67■■□□□ 1.86
SMC1BQ8NDV3 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
SMC1BQ8NDV3 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC26.67■■□□□ 1.86
SMC1BQ8NDV3 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
SMC1BQ8NDV3 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC26.66■■□□□ 1.86
SMC1BQ8NDV3 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC26.66■■□□□ 1.86
SMC1BQ8NDV3 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC26.66■■□□□ 1.86
SMC1BQ8NDV3 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC26.66■■□□□ 1.86
SMC1BQ8NDV3 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC26.66■■□□□ 1.86
SMC1BQ8NDV3 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC26.66■■□□□ 1.86
SMC1BQ8NDV3 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC26.66■■□□□ 1.86
SMC1BQ8NDV3 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
SMC1BQ8NDV3 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
SMC1BQ8NDV3 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC26.65■■□□□ 1.86
SMC1BQ8NDV3 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC26.65■■□□□ 1.86
SMC1BQ8NDV3 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC26.65■■□□□ 1.86
SMC1BQ8NDV3 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC26.65■■□□□ 1.86
SMC1BQ8NDV3 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
SMC1BQ8NDV3 BX005040.4-201ENST00000637145 1518 ntBASIC26.65■■□□□ 1.86
SMC1BQ8NDV3 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
SMC1BQ8NDV3 AC098590.1-201ENST00000468126 897 ntBASIC26.64■■□□□ 1.86
SMC1BQ8NDV3 RNA5SP413-201ENST00000516373 109 ntBASIC26.64■■□□□ 1.86
SMC1BQ8NDV3 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC26.64■■□□□ 1.86
SMC1BQ8NDV3 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC26.64■■□□□ 1.86
SMC1BQ8NDV3 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC26.64■■□□□ 1.86
SMC1BQ8NDV3 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC26.64■■□□□ 1.86
SMC1BQ8NDV3 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC26.63■■□□□ 1.85
SMC1BQ8NDV3 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC26.63■■□□□ 1.85
SMC1BQ8NDV3 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
SMC1BQ8NDV3 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC26.63■■□□□ 1.85
SMC1BQ8NDV3 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC26.63■■□□□ 1.85
SMC1BQ8NDV3 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
SMC1BQ8NDV3 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
SMC1BQ8NDV3 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC26.62■■□□□ 1.85
SMC1BQ8NDV3 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
SMC1BQ8NDV3 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
SMC1BQ8NDV3 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC26.62■■□□□ 1.85
SMC1BQ8NDV3 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC26.62■■□□□ 1.85
SMC1BQ8NDV3 DUX4L16-201ENST00000555130 1264 ntBASIC26.62■■□□□ 1.85
SMC1BQ8NDV3 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC26.62■■□□□ 1.85
SMC1BQ8NDV3 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC26.61■■□□□ 1.85
SMC1BQ8NDV3 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC26.61■■□□□ 1.85
SMC1BQ8NDV3 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
SMC1BQ8NDV3 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC26.61■■□□□ 1.85
SMC1BQ8NDV3 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
SMC1BQ8NDV3 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC26.61■■□□□ 1.85
SMC1BQ8NDV3 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
Retrieved 100 of 98,524 protein–RNA pairs in 13.9 ms