Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC21.32■■□□□ 1
COL28A1Q2UY09 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC21.32■■□□□ 1
COL28A1Q2UY09 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC21.32■■□□□ 1
COL28A1Q2UY09 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
COL28A1Q2UY09 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
COL28A1Q2UY09 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC21.32■■□□□ 1
COL28A1Q2UY09 AC026185.1-201ENST00000445748 174 ntBASIC21.32■■□□□ 1
COL28A1Q2UY09 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC21.32■■□□□ 1
COL28A1Q2UY09 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC21.32■■□□□ 1
COL28A1Q2UY09 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC21.32■■□□□ 1
COL28A1Q2UY09 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC21.32■■□□□ 1
COL28A1Q2UY09 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC21.32■■□□□ 1
COL28A1Q2UY09 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC21.32■■□□□ 1
COL28A1Q2UY09 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC21.32■■□□□ 1
COL28A1Q2UY09 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
COL28A1Q2UY09 THRA-202ENST00000394121 2260 ntTSL 2 BASIC21.31■■□□□ 1
COL28A1Q2UY09 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC21.31■■□□□ 1
COL28A1Q2UY09 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC21.31■■□□□ 1
COL28A1Q2UY09 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC21.31■■□□□ 1
COL28A1Q2UY09 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC21.31■■□□□ 1
COL28A1Q2UY09 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC21.31■■□□□ 1
COL28A1Q2UY09 AC009086.3-201ENST00000623486 1008 ntBASIC21.31■■□□□ 1
COL28A1Q2UY09 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC21.31■■□□□ 1
COL28A1Q2UY09 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC21.31■■□□□ 1
COL28A1Q2UY09 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC21.31■■□□□ 1
COL28A1Q2UY09 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
COL28A1Q2UY09 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC21.3■■□□□ 1
COL28A1Q2UY09 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
COL28A1Q2UY09 MIR572-201ENST00000384983 95 ntBASIC21.3■■□□□ 1
COL28A1Q2UY09 AC016769.1-201ENST00000409132 1010 ntBASIC21.3■■□□□ 1
COL28A1Q2UY09 AC006015.1-201ENST00000429970 570 ntBASIC21.3■■□□□ 1
COL28A1Q2UY09 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC21.3■■□□□ 1
COL28A1Q2UY09 AC006970.2-201ENST00000450065 779 ntBASIC21.3■■□□□ 1
COL28A1Q2UY09 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC21.3■■□□□ 1
COL28A1Q2UY09 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC21.3■■□□□ 1
COL28A1Q2UY09 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC21.3■■□□□ 1
COL28A1Q2UY09 LINC02228-203ENST00000641970 1355 ntBASIC21.3■■□□□ 1
COL28A1Q2UY09 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC21.3■■□□□ 1
COL28A1Q2UY09 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC21.3■■□□□ 1
COL28A1Q2UY09 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC21.29■■□□□ 1
COL28A1Q2UY09 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
COL28A1Q2UY09 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC21.29■■□□□ 1
COL28A1Q2UY09 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
COL28A1Q2UY09 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
COL28A1Q2UY09 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC21.29■■□□□ 1
COL28A1Q2UY09 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC21.29■■□□□ 1
COL28A1Q2UY09 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC21.29■■□□□ 1
COL28A1Q2UY09 C17orf82-201ENST00000623772 1530 ntBASIC21.29■■□□□ 1
COL28A1Q2UY09 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC21.28■■□□□ 1
COL28A1Q2UY09 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
COL28A1Q2UY09 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC21.28■■□□□ 1
COL28A1Q2UY09 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC21.28■■□□□ 1
COL28A1Q2UY09 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC21.28■■□□□ 1
COL28A1Q2UY09 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC21.28■■□□□ 1
COL28A1Q2UY09 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC21.28■■□□□ 1
COL28A1Q2UY09 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC21.28■■□□□ 1
COL28A1Q2UY09 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
COL28A1Q2UY09 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
COL28A1Q2UY09 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
COL28A1Q2UY09 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC21.27■■□□□ 1
COL28A1Q2UY09 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
COL28A1Q2UY09 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
COL28A1Q2UY09 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC21.27■■□□□ 1
COL28A1Q2UY09 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
COL28A1Q2UY09 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
COL28A1Q2UY09 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
COL28A1Q2UY09 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC21.27■■□□□ 1
COL28A1Q2UY09 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC21.27■■□□□ 1
COL28A1Q2UY09 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC21.27■■□□□ 1
COL28A1Q2UY09 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
COL28A1Q2UY09 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
COL28A1Q2UY09 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC21.27■□□□□ 0.99
COL28A1Q2UY09 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■□□□□ 0.99
COL28A1Q2UY09 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC21.26■□□□□ 0.99
COL28A1Q2UY09 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL28A1Q2UY09 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL28A1Q2UY09 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
COL28A1Q2UY09 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC21.26■□□□□ 0.99
COL28A1Q2UY09 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
COL28A1Q2UY09 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
COL28A1Q2UY09 AC137761.2-201ENST00000561729 223 ntBASIC21.26■□□□□ 0.99
COL28A1Q2UY09 AC145350.3-201ENST00000569033 163 ntBASIC21.26■□□□□ 0.99
COL28A1Q2UY09 AL499627.2-201ENST00000606283 725 ntBASIC21.26■□□□□ 0.99
COL28A1Q2UY09 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC21.26■□□□□ 0.99
COL28A1Q2UY09 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC21.26■□□□□ 0.99
COL28A1Q2UY09 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL28A1Q2UY09 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
COL28A1Q2UY09 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL28A1Q2UY09 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
COL28A1Q2UY09 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
COL28A1Q2UY09 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL28A1Q2UY09 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC21.25■□□□□ 0.99
COL28A1Q2UY09 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL28A1Q2UY09 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL28A1Q2UY09 AC093827.2-201ENST00000512654 315 ntBASIC21.25■□□□□ 0.99
COL28A1Q2UY09 IGHV3-19-201ENST00000521488 291 ntBASIC21.25■□□□□ 0.99
COL28A1Q2UY09 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC21.25■□□□□ 0.99
COL28A1Q2UY09 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC21.25■□□□□ 0.99
COL28A1Q2UY09 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL28A1Q2UY09 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 115.3 ms