Protein–RNA interactions for Protein: P78367

NKX3-2, Homeobox protein Nkx-3.2, humanhuman

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-2P78367 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
NKX3-2P78367 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
NKX3-2P78367 MFF-208ENST00000409616 1247 ntTSL 5 BASIC24.87■■□□□ 1.57
NKX3-2P78367 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC24.87■■□□□ 1.57
NKX3-2P78367 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC24.87■■□□□ 1.57
NKX3-2P78367 TPRG1LP1-201ENST00000598702 760 ntBASIC24.87■■□□□ 1.57
NKX3-2P78367 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC24.87■■□□□ 1.57
NKX3-2P78367 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
NKX3-2P78367 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
NKX3-2P78367 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC24.86■■□□□ 1.57
NKX3-2P78367 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
NKX3-2P78367 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
NKX3-2P78367 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
NKX3-2P78367 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC24.86■■□□□ 1.57
NKX3-2P78367 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC24.86■■□□□ 1.57
NKX3-2P78367 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
NKX3-2P78367 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC24.86■■□□□ 1.57
NKX3-2P78367 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC24.86■■□□□ 1.57
NKX3-2P78367 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC24.86■■□□□ 1.57
NKX3-2P78367 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC24.86■■□□□ 1.57
NKX3-2P78367 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
NKX3-2P78367 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
NKX3-2P78367 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
NKX3-2P78367 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC24.85■■□□□ 1.57
NKX3-2P78367 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
NKX3-2P78367 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
NKX3-2P78367 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC24.85■■□□□ 1.57
NKX3-2P78367 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC24.85■■□□□ 1.57
NKX3-2P78367 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC24.85■■□□□ 1.57
NKX3-2P78367 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
NKX3-2P78367 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
NKX3-2P78367 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
NKX3-2P78367 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC24.84■■□□□ 1.57
NKX3-2P78367 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
NKX3-2P78367 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC24.84■■□□□ 1.57
NKX3-2P78367 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC24.84■■□□□ 1.57
NKX3-2P78367 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC24.84■■□□□ 1.57
NKX3-2P78367 RAP2CP1-201ENST00000605103 478 ntBASIC24.84■■□□□ 1.57
NKX3-2P78367 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC24.84■■□□□ 1.57
NKX3-2P78367 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC24.84■■□□□ 1.57
NKX3-2P78367 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC24.84■■□□□ 1.57
NKX3-2P78367 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
NKX3-2P78367 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
NKX3-2P78367 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
NKX3-2P78367 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
NKX3-2P78367 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC24.83■■□□□ 1.57
NKX3-2P78367 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC24.83■■□□□ 1.57
NKX3-2P78367 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC24.83■■□□□ 1.57
NKX3-2P78367 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC24.83■■□□□ 1.56
NKX3-2P78367 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
NKX3-2P78367 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
NKX3-2P78367 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
NKX3-2P78367 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
NKX3-2P78367 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC24.82■■□□□ 1.56
NKX3-2P78367 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC24.82■■□□□ 1.56
NKX3-2P78367 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
NKX3-2P78367 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
NKX3-2P78367 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC24.82■■□□□ 1.56
NKX3-2P78367 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
NKX3-2P78367 AC135731.1-201ENST00000569415 2548 ntBASIC24.82■■□□□ 1.56
NKX3-2P78367 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
NKX3-2P78367 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
NKX3-2P78367 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
NKX3-2P78367 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
NKX3-2P78367 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC24.81■■□□□ 1.56
NKX3-2P78367 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC24.81■■□□□ 1.56
NKX3-2P78367 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC24.81■■□□□ 1.56
NKX3-2P78367 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC24.81■■□□□ 1.56
NKX3-2P78367 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC24.81■■□□□ 1.56
NKX3-2P78367 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
NKX3-2P78367 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
NKX3-2P78367 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
NKX3-2P78367 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC24.81■■□□□ 1.56
NKX3-2P78367 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC24.81■■□□□ 1.56
NKX3-2P78367 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
NKX3-2P78367 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC24.8■■□□□ 1.56
NKX3-2P78367 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC24.8■■□□□ 1.56
NKX3-2P78367 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
NKX3-2P78367 DENND3-207ENST00000518347 850 ntTSL 2 BASIC24.8■■□□□ 1.56
NKX3-2P78367 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
NKX3-2P78367 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
NKX3-2P78367 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
NKX3-2P78367 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
NKX3-2P78367 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC24.79■■□□□ 1.56
NKX3-2P78367 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC24.79■■□□□ 1.56
NKX3-2P78367 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
NKX3-2P78367 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC24.78■■□□□ 1.56
NKX3-2P78367 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC24.78■■□□□ 1.56
NKX3-2P78367 RARA-203ENST00000394086 2008 ntTSL 2 BASIC24.78■■□□□ 1.56
NKX3-2P78367 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC24.78■■□□□ 1.56
NKX3-2P78367 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
NKX3-2P78367 AC080038.1-201ENST00000611274 1154 ntBASIC24.78■■□□□ 1.56
NKX3-2P78367 GAS2L1P2-201ENST00000436355 1356 ntBASIC24.78■■□□□ 1.56
NKX3-2P78367 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
NKX3-2P78367 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
NKX3-2P78367 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
NKX3-2P78367 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
NKX3-2P78367 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC24.77■■□□□ 1.56
NKX3-2P78367 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC24.77■■□□□ 1.56
NKX3-2P78367 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC24.77■■□□□ 1.56
Retrieved 100 of 98,524 protein–RNA pairs in 16.7 ms