Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC31.26■■■□□ 2.6
MSH6P52701 ALDH1A3-203ENST00000557963 1670 ntBASIC31.26■■■□□ 2.59
MSH6P52701 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC31.26■■■□□ 2.59
MSH6P52701 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
MSH6P52701 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
MSH6P52701 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
MSH6P52701 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC31.25■■■□□ 2.59
MSH6P52701 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
MSH6P52701 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
MSH6P52701 MIR4651-201ENST00000582622 73 ntBASIC31.25■■■□□ 2.59
MSH6P52701 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
MSH6P52701 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC31.25■■■□□ 2.59
MSH6P52701 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
MSH6P52701 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC31.24■■■□□ 2.59
MSH6P52701 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC31.24■■■□□ 2.59
MSH6P52701 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
MSH6P52701 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC31.24■■■□□ 2.59
MSH6P52701 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC31.23■■■□□ 2.59
MSH6P52701 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC31.23■■■□□ 2.59
MSH6P52701 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC31.23■■■□□ 2.59
MSH6P52701 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC31.23■■■□□ 2.59
MSH6P52701 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC31.23■■■□□ 2.59
MSH6P52701 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC31.23■■■□□ 2.59
MSH6P52701 SPI1-203ENST00000533030 661 ntTSL 2 BASIC31.23■■■□□ 2.59
MSH6P52701 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC31.23■■■□□ 2.59
MSH6P52701 AL121832.2-201ENST00000610979 668 ntBASIC31.23■■■□□ 2.59
MSH6P52701 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC31.23■■■□□ 2.59
MSH6P52701 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
MSH6P52701 DET1-205ENST00000558413 583 ntTSL 4 BASIC31.22■■■□□ 2.59
MSH6P52701 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC31.22■■■□□ 2.59
MSH6P52701 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
MSH6P52701 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
MSH6P52701 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
MSH6P52701 LSR-205ENST00000427250 1606 ntTSL 2 BASIC31.22■■■□□ 2.59
MSH6P52701 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC31.22■■■□□ 2.59
MSH6P52701 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC31.21■■■□□ 2.59
MSH6P52701 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
MSH6P52701 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
MSH6P52701 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC31.21■■■□□ 2.59
MSH6P52701 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
MSH6P52701 AL050303.2-201ENST00000619798 666 ntBASIC31.21■■■□□ 2.59
MSH6P52701 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
MSH6P52701 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC31.21■■■□□ 2.59
MSH6P52701 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
MSH6P52701 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
MSH6P52701 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
MSH6P52701 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC31.2■■■□□ 2.59
MSH6P52701 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC31.2■■■□□ 2.59
MSH6P52701 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC31.2■■■□□ 2.59
MSH6P52701 TSPY6P-201ENST00000448518 926 ntBASIC31.2■■■□□ 2.59
MSH6P52701 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC31.2■■■□□ 2.59
MSH6P52701 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
MSH6P52701 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC31.2■■■□□ 2.59
MSH6P52701 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC31.2■■■□□ 2.59
MSH6P52701 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.58
MSH6P52701 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC31.2■■■□□ 2.58
MSH6P52701 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.58
MSH6P52701 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
MSH6P52701 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
MSH6P52701 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
MSH6P52701 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC31.19■■■□□ 2.58
MSH6P52701 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC31.19■■■□□ 2.58
MSH6P52701 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC31.19■■■□□ 2.58
MSH6P52701 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC31.19■■■□□ 2.58
MSH6P52701 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC31.19■■■□□ 2.58
MSH6P52701 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC31.19■■■□□ 2.58
MSH6P52701 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC31.19■■■□□ 2.58
MSH6P52701 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
MSH6P52701 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
MSH6P52701 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
MSH6P52701 GUSBP6-202ENST00000438529 1198 ntBASIC31.18■■■□□ 2.58
MSH6P52701 KLF13-207ENST00000560473 489 ntTSL 3 BASIC31.18■■■□□ 2.58
MSH6P52701 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC31.18■■■□□ 2.58
MSH6P52701 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
MSH6P52701 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC31.17■■■□□ 2.58
MSH6P52701 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
MSH6P52701 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
MSH6P52701 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC31.17■■■□□ 2.58
MSH6P52701 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
MSH6P52701 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC31.17■■■□□ 2.58
MSH6P52701 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC31.16■■■□□ 2.58
MSH6P52701 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC31.16■■■□□ 2.58
MSH6P52701 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC31.16■■■□□ 2.58
MSH6P52701 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC31.16■■■□□ 2.58
MSH6P52701 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC31.16■■■□□ 2.58
MSH6P52701 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC31.16■■■□□ 2.58
MSH6P52701 RARA-203ENST00000394086 2008 ntTSL 2 BASIC31.15■■■□□ 2.58
MSH6P52701 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC31.15■■■□□ 2.58
MSH6P52701 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC31.15■■■□□ 2.58
MSH6P52701 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
MSH6P52701 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
MSH6P52701 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC31.15■■■□□ 2.58
MSH6P52701 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC31.15■■■□□ 2.58
MSH6P52701 MFSD11-216ENST00000590393 1141 ntBASIC31.15■■■□□ 2.58
MSH6P52701 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC31.15■■■□□ 2.58
MSH6P52701 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC31.14■■■□□ 2.58
MSH6P52701 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC31.14■■■□□ 2.58
MSH6P52701 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
MSH6P52701 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC31.14■■■□□ 2.58
MSH6P52701 FAM201B-201ENST00000458407 597 ntBASIC31.14■■■□□ 2.58
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms