Protein–RNA interactions for Protein: P49761

CLK3, Dual specificity protein kinase CLK3, humanhuman

Known RBP Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3P49761 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC20.96■□□□□ 0.95
CLK3P49761 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CLK3P49761 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CLK3P49761 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CLK3P49761 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC20.96■□□□□ 0.95
CLK3P49761 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
CLK3P49761 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CLK3P49761 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CLK3P49761 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CLK3P49761 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CLK3P49761 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CLK3P49761 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
CLK3P49761 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
CLK3P49761 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
CLK3P49761 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CLK3P49761 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CLK3P49761 GUSBP5-201ENST00000418136 578 ntBASIC20.95■□□□□ 0.94
CLK3P49761 CREM-229ENST00000474362 1030 ntTSL 2 BASIC20.95■□□□□ 0.94
CLK3P49761 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC20.95■□□□□ 0.94
CLK3P49761 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC20.95■□□□□ 0.94
CLK3P49761 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
CLK3P49761 REST-206ENST00000612429 1376 ntTSL 5 BASIC20.95■□□□□ 0.94
CLK3P49761 REST-207ENST00000616975 1370 ntTSL 5 BASIC20.95■□□□□ 0.94
CLK3P49761 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CLK3P49761 ECEL1P1-201ENST00000373592 1742 ntBASIC20.95■□□□□ 0.94
CLK3P49761 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
CLK3P49761 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CLK3P49761 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
CLK3P49761 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC20.94■□□□□ 0.94
CLK3P49761 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CLK3P49761 ALDH1A3-203ENST00000557963 1670 ntBASIC20.94■□□□□ 0.94
CLK3P49761 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CLK3P49761 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CLK3P49761 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC20.94■□□□□ 0.94
CLK3P49761 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
CLK3P49761 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CLK3P49761 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CLK3P49761 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CLK3P49761 AL024507.2-201ENST00000606070 2574 ntBASIC20.93■□□□□ 0.94
CLK3P49761 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CLK3P49761 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CLK3P49761 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CLK3P49761 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CLK3P49761 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CLK3P49761 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CLK3P49761 EI24-213ENST00000618552 1747 ntTSL 5 BASIC20.93■□□□□ 0.94
CLK3P49761 AC127496.7-201ENST00000625110 1798 ntBASIC20.93■□□□□ 0.94
CLK3P49761 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CLK3P49761 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC20.93■□□□□ 0.94
CLK3P49761 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC20.93■□□□□ 0.94
CLK3P49761 EXOG-217ENST00000630638 197 ntTSL 5 BASIC20.93■□□□□ 0.94
CLK3P49761 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
CLK3P49761 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CLK3P49761 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CLK3P49761 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
CLK3P49761 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CLK3P49761 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC20.93■□□□□ 0.94
CLK3P49761 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC20.93■□□□□ 0.94
CLK3P49761 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CLK3P49761 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CLK3P49761 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CLK3P49761 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
CLK3P49761 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC20.92■□□□□ 0.94
CLK3P49761 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CLK3P49761 KRT16P3-201ENST00000439127 1283 ntBASIC20.92■□□□□ 0.94
CLK3P49761 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
CLK3P49761 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC20.92■□□□□ 0.94
CLK3P49761 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
CLK3P49761 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
CLK3P49761 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC20.92■□□□□ 0.94
CLK3P49761 AC005703.6-201ENST00000623265 1329 ntBASIC20.92■□□□□ 0.94
CLK3P49761 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC20.92■□□□□ 0.94
CLK3P49761 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CLK3P49761 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CLK3P49761 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CLK3P49761 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC20.92■□□□□ 0.94
CLK3P49761 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC20.92■□□□□ 0.94
CLK3P49761 AC137767.1-201ENST00000602918 1920 ntBASIC20.92■□□□□ 0.94
CLK3P49761 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CLK3P49761 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC20.92■□□□□ 0.94
CLK3P49761 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CLK3P49761 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CLK3P49761 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CLK3P49761 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
CLK3P49761 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CLK3P49761 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC20.91■□□□□ 0.94
CLK3P49761 EFS-203ENST00000429593 2610 ntTSL 2 BASIC20.91■□□□□ 0.94
CLK3P49761 WWC2-AS2-201ENST00000578387 2183 ntBASIC20.91■□□□□ 0.94
CLK3P49761 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
CLK3P49761 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
CLK3P49761 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CLK3P49761 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
CLK3P49761 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CLK3P49761 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC20.9■□□□□ 0.94
CLK3P49761 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CLK3P49761 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CLK3P49761 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CLK3P49761 UNC93B8-201ENST00000511903 705 ntBASIC20.9■□□□□ 0.94
CLK3P49761 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CLK3P49761 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms