Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC29.9■■■□□ 2.38
COL18A1P39060 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC29.9■■■□□ 2.38
COL18A1P39060 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC29.9■■■□□ 2.38
COL18A1P39060 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC29.89■■■□□ 2.38
COL18A1P39060 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC29.89■■■□□ 2.38
COL18A1P39060 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC29.89■■■□□ 2.38
COL18A1P39060 AC105233.4-201ENST00000642045 216 ntBASIC29.89■■■□□ 2.38
COL18A1P39060 AC144652.1-201ENST00000609974 1624 ntBASIC29.88■■■□□ 2.37
COL18A1P39060 CDCA4P2-201ENST00000441182 718 ntBASIC29.88■■■□□ 2.37
COL18A1P39060 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC29.88■■■□□ 2.37
COL18A1P39060 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC29.88■■■□□ 2.37
COL18A1P39060 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC29.88■■■□□ 2.37
COL18A1P39060 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC29.87■■■□□ 2.37
COL18A1P39060 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC29.87■■■□□ 2.37
COL18A1P39060 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
COL18A1P39060 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
COL18A1P39060 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
COL18A1P39060 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
COL18A1P39060 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC29.87■■■□□ 2.37
COL18A1P39060 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC29.86■■■□□ 2.37
COL18A1P39060 EMC9-206ENST00000560403 872 ntTSL 2 BASIC29.86■■■□□ 2.37
COL18A1P39060 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC29.86■■■□□ 2.37
COL18A1P39060 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC29.85■■■□□ 2.37
COL18A1P39060 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
COL18A1P39060 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC29.85■■■□□ 2.37
COL18A1P39060 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC29.85■■■□□ 2.37
COL18A1P39060 MFF-208ENST00000409616 1247 ntTSL 5 BASIC29.85■■■□□ 2.37
COL18A1P39060 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC29.85■■■□□ 2.37
COL18A1P39060 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
COL18A1P39060 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC29.84■■■□□ 2.37
COL18A1P39060 STX4-202ENST00000394998 1498 ntTSL 2 BASIC29.84■■■□□ 2.37
COL18A1P39060 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC29.84■■■□□ 2.37
COL18A1P39060 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
COL18A1P39060 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
COL18A1P39060 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC29.84■■■□□ 2.37
COL18A1P39060 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC29.84■■■□□ 2.37
COL18A1P39060 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC29.83■■■□□ 2.37
COL18A1P39060 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
COL18A1P39060 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
COL18A1P39060 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC29.83■■■□□ 2.37
COL18A1P39060 AC016769.1-201ENST00000409132 1010 ntBASIC29.83■■■□□ 2.37
COL18A1P39060 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC29.83■■■□□ 2.37
COL18A1P39060 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC29.83■■■□□ 2.37
COL18A1P39060 AC080038.1-201ENST00000611274 1154 ntBASIC29.83■■■□□ 2.37
COL18A1P39060 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC29.83■■■□□ 2.37
COL18A1P39060 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC29.83■■■□□ 2.37
COL18A1P39060 AP004607.4-201ENST00000530158 1459 ntBASIC29.83■■■□□ 2.37
COL18A1P39060 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC29.83■■■□□ 2.37
COL18A1P39060 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC29.83■■■□□ 2.37
COL18A1P39060 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
COL18A1P39060 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
COL18A1P39060 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC29.82■■■□□ 2.36
COL18A1P39060 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC29.82■■■□□ 2.36
COL18A1P39060 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC29.82■■■□□ 2.36
COL18A1P39060 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
COL18A1P39060 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
COL18A1P39060 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
COL18A1P39060 STX7-201ENST00000367937 1090 ntTSL 5 BASIC29.82■■■□□ 2.36
COL18A1P39060 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC29.82■■■□□ 2.36
COL18A1P39060 HSCB-202ENST00000398941 955 ntTSL 2 BASIC29.82■■■□□ 2.36
COL18A1P39060 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC29.82■■■□□ 2.36
COL18A1P39060 DBI-210ENST00000542275 757 ntTSL 5 BASIC29.82■■■□□ 2.36
COL18A1P39060 AC137761.2-201ENST00000561729 223 ntBASIC29.82■■■□□ 2.36
COL18A1P39060 AC145350.3-201ENST00000569033 163 ntBASIC29.82■■■□□ 2.36
COL18A1P39060 GALNS-213ENST00000569433 723 ntTSL 3 BASIC29.82■■■□□ 2.36
COL18A1P39060 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
COL18A1P39060 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
COL18A1P39060 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC29.82■■■□□ 2.36
COL18A1P39060 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC29.81■■■□□ 2.36
COL18A1P39060 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
COL18A1P39060 WWOX-218ENST00000627394 894 ntTSL 5 BASIC29.81■■■□□ 2.36
COL18A1P39060 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC29.81■■■□□ 2.36
COL18A1P39060 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
COL18A1P39060 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
COL18A1P39060 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC29.8■■■□□ 2.36
COL18A1P39060 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC29.8■■■□□ 2.36
COL18A1P39060 AP003733.4-201ENST00000623785 1697 ntBASIC29.8■■■□□ 2.36
COL18A1P39060 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC29.8■■■□□ 2.36
COL18A1P39060 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC29.8■■■□□ 2.36
COL18A1P39060 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC29.8■■■□□ 2.36
COL18A1P39060 AC104771.1-201ENST00000603335 964 ntBASIC29.8■■■□□ 2.36
COL18A1P39060 AC004854.2-201ENST00000608450 1441 ntBASIC29.8■■■□□ 2.36
COL18A1P39060 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
COL18A1P39060 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC29.79■■■□□ 2.36
COL18A1P39060 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
COL18A1P39060 TMEM202-AS1-202ENST00000565181 2325 ntBASIC29.79■■■□□ 2.36
COL18A1P39060 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
COL18A1P39060 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC29.78■■■□□ 2.36
COL18A1P39060 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC29.78■■■□□ 2.36
COL18A1P39060 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
COL18A1P39060 AC022211.4-201ENST00000625094 2161 ntBASIC29.78■■■□□ 2.36
COL18A1P39060 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC29.78■■■□□ 2.36
COL18A1P39060 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC29.77■■■□□ 2.36
COL18A1P39060 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC29.77■■■□□ 2.36
COL18A1P39060 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC29.77■■■□□ 2.36
COL18A1P39060 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC29.77■■■□□ 2.36
COL18A1P39060 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC29.77■■■□□ 2.36
COL18A1P39060 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
COL18A1P39060 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC29.77■■■□□ 2.36
COL18A1P39060 GXYLT1P5-201ENST00000614548 1189 ntBASIC29.77■■■□□ 2.36
Retrieved 100 of 98,524 protein–RNA pairs in 12.6 ms