Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC21.2■□□□□ 0.98
MSX2P35548 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC21.2■□□□□ 0.98
MSX2P35548 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
MSX2P35548 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
MSX2P35548 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
MSX2P35548 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
MSX2P35548 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC21.2■□□□□ 0.98
MSX2P35548 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
MSX2P35548 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
MSX2P35548 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
MSX2P35548 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
MSX2P35548 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
MSX2P35548 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
MSX2P35548 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC21.19■□□□□ 0.98
MSX2P35548 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
MSX2P35548 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC21.19■□□□□ 0.98
MSX2P35548 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
MSX2P35548 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
MSX2P35548 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
MSX2P35548 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
MSX2P35548 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
MSX2P35548 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC21.19■□□□□ 0.98
MSX2P35548 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC21.19■□□□□ 0.98
MSX2P35548 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
MSX2P35548 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC21.19■□□□□ 0.98
MSX2P35548 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC21.19■□□□□ 0.98
MSX2P35548 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
MSX2P35548 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
MSX2P35548 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC21.18■□□□□ 0.98
MSX2P35548 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
MSX2P35548 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
MSX2P35548 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC21.18■□□□□ 0.98
MSX2P35548 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC21.18■□□□□ 0.98
MSX2P35548 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
MSX2P35548 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
MSX2P35548 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
MSX2P35548 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
MSX2P35548 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC21.18■□□□□ 0.98
MSX2P35548 AL353803.4-201ENST00000565882 1934 ntBASIC21.17■□□□□ 0.98
MSX2P35548 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
MSX2P35548 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
MSX2P35548 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
MSX2P35548 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
MSX2P35548 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
MSX2P35548 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
MSX2P35548 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC21.17■□□□□ 0.98
MSX2P35548 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
MSX2P35548 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
MSX2P35548 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
MSX2P35548 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
MSX2P35548 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
MSX2P35548 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
MSX2P35548 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
MSX2P35548 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
MSX2P35548 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC21.17■□□□□ 0.98
MSX2P35548 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC21.17■□□□□ 0.98
MSX2P35548 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC21.17■□□□□ 0.98
MSX2P35548 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
MSX2P35548 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
MSX2P35548 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
MSX2P35548 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
MSX2P35548 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
MSX2P35548 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC21.16■□□□□ 0.98
MSX2P35548 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
MSX2P35548 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC21.16■□□□□ 0.98
MSX2P35548 AC087393.1-201ENST00000582896 145 ntBASIC21.16■□□□□ 0.98
MSX2P35548 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
MSX2P35548 AC018755.3-202ENST00000596210 929 ntBASIC21.16■□□□□ 0.98
MSX2P35548 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
MSX2P35548 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
MSX2P35548 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
MSX2P35548 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
MSX2P35548 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC21.15■□□□□ 0.98
MSX2P35548 GPX1-201ENST00000419349 1106 ntBASIC21.15■□□□□ 0.98
MSX2P35548 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
MSX2P35548 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC21.15■□□□□ 0.98
MSX2P35548 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
MSX2P35548 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
MSX2P35548 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
MSX2P35548 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
MSX2P35548 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
MSX2P35548 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
MSX2P35548 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
MSX2P35548 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
MSX2P35548 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
MSX2P35548 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
MSX2P35548 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC21.14■□□□□ 0.97
MSX2P35548 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
MSX2P35548 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
MSX2P35548 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
MSX2P35548 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
MSX2P35548 HES4-202ENST00000428771 1040 ntTSL 2 BASIC21.13■□□□□ 0.97
MSX2P35548 MIR7108-201ENST00000614319 87 ntBASIC21.13■□□□□ 0.97
MSX2P35548 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
MSX2P35548 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC21.13■□□□□ 0.97
MSX2P35548 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC21.13■□□□□ 0.97
MSX2P35548 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC21.12■□□□□ 0.97
MSX2P35548 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
MSX2P35548 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
MSX2P35548 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC21.12■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms