Protein–RNA interactions for Protein: O60232

SSSCA1, Sjoegren syndrome/scleroderma autoantigen 1, humanhuman

Predictions only

Length 199 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1O60232 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SSSCA1O60232 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SSSCA1O60232 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SSSCA1O60232 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SSSCA1O60232 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
SSSCA1O60232 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SSSCA1O60232 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
SSSCA1O60232 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
SSSCA1O60232 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC18.1■□□□□ 0.49
SSSCA1O60232 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SSSCA1O60232 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
SSSCA1O60232 STK32C-205ENST00000456004 607 ntTSL 2 BASIC18.1■□□□□ 0.49
SSSCA1O60232 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SSSCA1O60232 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
SSSCA1O60232 SRP68-213ENST00000629930 165 ntTSL 5 BASIC18.1■□□□□ 0.49
SSSCA1O60232 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC18.1■□□□□ 0.49
SSSCA1O60232 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SSSCA1O60232 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SSSCA1O60232 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SSSCA1O60232 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC18.09■□□□□ 0.49
SSSCA1O60232 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
SSSCA1O60232 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SSSCA1O60232 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
SSSCA1O60232 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC18.09■□□□□ 0.49
SSSCA1O60232 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
SSSCA1O60232 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
SSSCA1O60232 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC18.09■□□□□ 0.49
SSSCA1O60232 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SSSCA1O60232 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SSSCA1O60232 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
SSSCA1O60232 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SSSCA1O60232 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC18.09■□□□□ 0.49
SSSCA1O60232 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SSSCA1O60232 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SSSCA1O60232 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
SSSCA1O60232 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
SSSCA1O60232 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
SSSCA1O60232 AC131274.2-201ENST00000580697 1507 ntBASIC18.08■□□□□ 0.49
SSSCA1O60232 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC18.08■□□□□ 0.49
SSSCA1O60232 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC18.08■□□□□ 0.49
SSSCA1O60232 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC18.08■□□□□ 0.48
SSSCA1O60232 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SSSCA1O60232 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SSSCA1O60232 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SSSCA1O60232 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
SSSCA1O60232 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC18.08■□□□□ 0.48
SSSCA1O60232 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SSSCA1O60232 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SSSCA1O60232 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC18.08■□□□□ 0.48
SSSCA1O60232 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.48
SSSCA1O60232 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
SSSCA1O60232 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SSSCA1O60232 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SSSCA1O60232 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
SSSCA1O60232 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SSSCA1O60232 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
SSSCA1O60232 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SSSCA1O60232 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC18.07■□□□□ 0.48
SSSCA1O60232 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
SSSCA1O60232 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
SSSCA1O60232 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
SSSCA1O60232 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC18.07■□□□□ 0.48
SSSCA1O60232 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SSSCA1O60232 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SSSCA1O60232 AC009831.1-201ENST00000580420 1582 ntBASIC18.07■□□□□ 0.48
SSSCA1O60232 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SSSCA1O60232 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC18.07■□□□□ 0.48
SSSCA1O60232 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC18.07■□□□□ 0.48
SSSCA1O60232 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SSSCA1O60232 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SSSCA1O60232 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SSSCA1O60232 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
SSSCA1O60232 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC18.07■□□□□ 0.48
SSSCA1O60232 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC18.06■□□□□ 0.48
SSSCA1O60232 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC18.06■□□□□ 0.48
SSSCA1O60232 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
SSSCA1O60232 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC18.06■□□□□ 0.48
SSSCA1O60232 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SSSCA1O60232 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SSSCA1O60232 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
SSSCA1O60232 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SSSCA1O60232 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SSSCA1O60232 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SSSCA1O60232 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SSSCA1O60232 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC18.06■□□□□ 0.48
SSSCA1O60232 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC18.06■□□□□ 0.48
SSSCA1O60232 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SSSCA1O60232 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC18.06■□□□□ 0.48
SSSCA1O60232 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC18.06■□□□□ 0.48
SSSCA1O60232 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC18.05■□□□□ 0.48
SSSCA1O60232 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
SSSCA1O60232 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SSSCA1O60232 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SSSCA1O60232 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SSSCA1O60232 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SSSCA1O60232 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
SSSCA1O60232 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
SSSCA1O60232 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SSSCA1O60232 AC080038.3-201ENST00000623346 1952 ntBASIC18.05■□□□□ 0.48
SSSCA1O60232 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC18.05■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms