Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
TRIM49D1C9J1S8 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
TRIM49D1C9J1S8 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.15
TRIM49D1C9J1S8 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
TRIM49D1C9J1S8 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC22.26■■□□□ 1.15
TRIM49D1C9J1S8 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
TRIM49D1C9J1S8 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
TRIM49D1C9J1S8 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
TRIM49D1C9J1S8 ATP5G2P3-201ENST00000429083 425 ntBASIC22.26■■□□□ 1.15
TRIM49D1C9J1S8 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC22.26■■□□□ 1.15
TRIM49D1C9J1S8 AC074183.2-201ENST00000623112 922 ntBASIC22.26■■□□□ 1.15
TRIM49D1C9J1S8 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
TRIM49D1C9J1S8 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
TRIM49D1C9J1S8 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
TRIM49D1C9J1S8 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
TRIM49D1C9J1S8 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
TRIM49D1C9J1S8 EFS-203ENST00000429593 2610 ntTSL 2 BASIC22.26■■□□□ 1.15
TRIM49D1C9J1S8 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
TRIM49D1C9J1S8 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
TRIM49D1C9J1S8 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
TRIM49D1C9J1S8 AC080038.3-201ENST00000623346 1952 ntBASIC22.25■■□□□ 1.15
TRIM49D1C9J1S8 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC22.25■■□□□ 1.15
TRIM49D1C9J1S8 AC092053.2-201ENST00000640557 1818 ntBASIC22.25■■□□□ 1.15
TRIM49D1C9J1S8 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
TRIM49D1C9J1S8 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
TRIM49D1C9J1S8 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC22.25■■□□□ 1.15
TRIM49D1C9J1S8 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC22.25■■□□□ 1.15
TRIM49D1C9J1S8 AC010980.1-201ENST00000587192 1142 ntBASIC22.25■■□□□ 1.15
TRIM49D1C9J1S8 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC22.25■■□□□ 1.15
TRIM49D1C9J1S8 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
TRIM49D1C9J1S8 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC22.25■■□□□ 1.15
TRIM49D1C9J1S8 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC22.25■■□□□ 1.15
TRIM49D1C9J1S8 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC22.25■■□□□ 1.15
TRIM49D1C9J1S8 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC22.25■■□□□ 1.15
TRIM49D1C9J1S8 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
TRIM49D1C9J1S8 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC22.25■■□□□ 1.15
TRIM49D1C9J1S8 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC22.25■■□□□ 1.15
TRIM49D1C9J1S8 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
TRIM49D1C9J1S8 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC22.24■■□□□ 1.15
TRIM49D1C9J1S8 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC22.24■■□□□ 1.15
TRIM49D1C9J1S8 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC22.24■■□□□ 1.15
TRIM49D1C9J1S8 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
TRIM49D1C9J1S8 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
TRIM49D1C9J1S8 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC22.24■■□□□ 1.15
TRIM49D1C9J1S8 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
TRIM49D1C9J1S8 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC22.24■■□□□ 1.15
TRIM49D1C9J1S8 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
TRIM49D1C9J1S8 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
TRIM49D1C9J1S8 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC22.24■■□□□ 1.15
TRIM49D1C9J1S8 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC22.24■■□□□ 1.15
TRIM49D1C9J1S8 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC22.24■■□□□ 1.15
TRIM49D1C9J1S8 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC22.24■■□□□ 1.15
TRIM49D1C9J1S8 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
TRIM49D1C9J1S8 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
TRIM49D1C9J1S8 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
TRIM49D1C9J1S8 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC22.23■■□□□ 1.15
TRIM49D1C9J1S8 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
TRIM49D1C9J1S8 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC22.23■■□□□ 1.15
TRIM49D1C9J1S8 LSM7-203ENST00000585409 512 ntTSL 2 BASIC22.23■■□□□ 1.15
TRIM49D1C9J1S8 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC22.23■■□□□ 1.15
TRIM49D1C9J1S8 C11orf96-202ENST00000528572 1834 ntBASIC22.22■■□□□ 1.15
TRIM49D1C9J1S8 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
TRIM49D1C9J1S8 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
TRIM49D1C9J1S8 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
TRIM49D1C9J1S8 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC22.22■■□□□ 1.15
TRIM49D1C9J1S8 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC22.22■■□□□ 1.15
TRIM49D1C9J1S8 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
TRIM49D1C9J1S8 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
TRIM49D1C9J1S8 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
TRIM49D1C9J1S8 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
TRIM49D1C9J1S8 AC144652.1-201ENST00000609974 1624 ntBASIC22.21■■□□□ 1.15
TRIM49D1C9J1S8 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
TRIM49D1C9J1S8 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
TRIM49D1C9J1S8 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
TRIM49D1C9J1S8 AC087742.1-201ENST00000575880 1738 ntBASIC22.21■■□□□ 1.15
TRIM49D1C9J1S8 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
TRIM49D1C9J1S8 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC22.21■■□□□ 1.15
TRIM49D1C9J1S8 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC22.21■■□□□ 1.15
TRIM49D1C9J1S8 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC22.21■■□□□ 1.15
TRIM49D1C9J1S8 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC22.21■■□□□ 1.15
TRIM49D1C9J1S8 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
TRIM49D1C9J1S8 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC22.21■■□□□ 1.15
TRIM49D1C9J1S8 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC22.21■■□□□ 1.15
TRIM49D1C9J1S8 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC22.2■■□□□ 1.15
TRIM49D1C9J1S8 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
TRIM49D1C9J1S8 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
TRIM49D1C9J1S8 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC22.2■■□□□ 1.14
TRIM49D1C9J1S8 REST-206ENST00000612429 1376 ntTSL 5 BASIC22.2■■□□□ 1.14
TRIM49D1C9J1S8 REST-207ENST00000616975 1370 ntTSL 5 BASIC22.2■■□□□ 1.14
TRIM49D1C9J1S8 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
TRIM49D1C9J1S8 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC22.2■■□□□ 1.14
TRIM49D1C9J1S8 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
TRIM49D1C9J1S8 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
TRIM49D1C9J1S8 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
TRIM49D1C9J1S8 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC22.19■■□□□ 1.14
TRIM49D1C9J1S8 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
TRIM49D1C9J1S8 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
TRIM49D1C9J1S8 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
TRIM49D1C9J1S8 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC22.19■■□□□ 1.14
TRIM49D1C9J1S8 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms