Protein–RNA interactions for Protein: P49759

CLK1, Dual specificity protein kinase CLK1, humanhuman

Known RBP Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1P49759 ZNF595-205ENST00000610261 2911 ntAPPRIS P4 TSL 1 (best) BASIC12.92□□□□□ -0.34
CLK1P49759 SIX1-203ENST00000554986 1959 ntTSL 3 BASIC12.92□□□□□ -0.34
CLK1P49759 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CLK1P49759 ZNF706-209ENST00000520347 3502 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
CLK1P49759 VWA8-203ENST00000379310 7147 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
CLK1P49759 TRPC7-202ENST00000378459 2406 ntTSL 5 BASIC12.92□□□□□ -0.34
CLK1P49759 MAMDC4-201ENST00000317446 3658 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
CLK1P49759 AP3M2-207ENST00000518421 3669 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CLK1P49759 TMX1-201ENST00000457354 3995 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CLK1P49759 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CLK1P49759 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC12.92□□□□□ -0.34
CLK1P49759 XRCC6-201ENST00000359308 2709 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CLK1P49759 RPL13AP3-202ENST00000494676 1473 ntBASIC12.92□□□□□ -0.34
CLK1P49759 MAP7D2-204ENST00000452324 2233 ntAPPRIS ALT2 TSL 2 BASIC12.92□□□□□ -0.34
CLK1P49759 TMEM56-201ENST00000370203 6822 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CLK1P49759 NAALADL1-201ENST00000340252 2376 ntTSL 5 BASIC12.92□□□□□ -0.34
CLK1P49759 MATN2-211ENST00000521689 3554 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
CLK1P49759 KCNMA1-285ENST00000640605 3864 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
CLK1P49759 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC12.92□□□□□ -0.34
CLK1P49759 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CLK1P49759 ZNF774-201ENST00000354377 3202 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CLK1P49759 CDK5RAP1-203ENST00000357886 2164 ntTSL 5 BASIC12.92□□□□□ -0.34
CLK1P49759 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CLK1P49759 DCAF12L1-201ENST00000371126 3382 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CLK1P49759 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
CLK1P49759 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
CLK1P49759 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
CLK1P49759 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CLK1P49759 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC12.92□□□□□ -0.34
CLK1P49759 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC12.92□□□□□ -0.34
CLK1P49759 KRT8P13-201ENST00000463294 1010 ntBASIC12.92□□□□□ -0.34
CLK1P49759 NUP58-206ENST00000463407 6360 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CLK1P49759 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CLK1P49759 CCT3-211ENST00000472765 1858 ntTSL 2 BASIC12.92□□□□□ -0.34
CLK1P49759 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
CLK1P49759 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CLK1P49759 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC12.92□□□□□ -0.34
CLK1P49759 EMC4-209ENST00000559421 497 ntTSL 2 BASIC12.92□□□□□ -0.34
CLK1P49759 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CLK1P49759 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC12.92□□□□□ -0.34
CLK1P49759 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CLK1P49759 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CLK1P49759 CEP95-212ENST00000581056 903 ntAPPRIS ALT2 TSL 2 BASIC12.92□□□□□ -0.34
CLK1P49759 AC020914.3-201ENST00000594712 304 ntBASIC12.92□□□□□ -0.34
CLK1P49759 MICAL1-208ENST00000630715 3678 ntTSL 2 BASIC12.92□□□□□ -0.34
CLK1P49759 PLEKHG2-203ENST00000425673 8132 ntAPPRIS P2 TSL 2 BASIC12.92□□□□□ -0.34
CLK1P49759 APOBR-202ENST00000564831 3792 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
CLK1P49759 MSH2-201ENST00000233146 3307 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CLK1P49759 SPATS2-201ENST00000321898 3158 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CLK1P49759 RASA4CP-203ENST00000446874 3193 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CLK1P49759 ZFAND3-203ENST00000373391 3001 ntTSL 5 BASIC12.92□□□□□ -0.34
CLK1P49759 GTF2IRD1P1-202ENST00000457166 2426 ntTSL 2 BASIC12.92□□□□□ -0.34
CLK1P49759 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC12.92□□□□□ -0.34
CLK1P49759 KCNMA1-241ENST00000638606 3852 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
CLK1P49759 KCNMA1-279ENST00000640182 3852 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
CLK1P49759 SLC36A1-201ENST00000243389 5781 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CLK1P49759 LGALS12-204ENST00000415491 1816 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CLK1P49759 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CLK1P49759 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC12.92□□□□□ -0.34
CLK1P49759 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CLK1P49759 DLEC1-201ENST00000308059 6426 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
CLK1P49759 AC019205.2-203ENST00000421315 3362 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CLK1P49759 AC009501.1-201ENST00000429952 2069 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CLK1P49759 CDCA3-202ENST00000422785 2760 ntTSL 2 BASIC12.92□□□□□ -0.34
CLK1P49759 LINC01679-201ENST00000442815 2798 ntTSL 3 BASIC12.92□□□□□ -0.34
CLK1P49759 TMBIM6-217ENST00000549385 2771 ntAPPRIS P3 TSL 5 BASIC12.92□□□□□ -0.34
CLK1P49759 FGFRL1-202ENST00000398484 3639 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
CLK1P49759 TOR1AIP1-212ENST00000606911 8704 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
CLK1P49759 ATP7B-202ENST00000344297 5861 ntTSL 5 BASIC12.91□□□□□ -0.34
CLK1P49759 ZNF75D-202ENST00000370766 5592 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
CLK1P49759 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CLK1P49759 PLCXD1-201ENST00000381657 5507 ntAPPRIS P2 TSL 5 BASIC12.91□□□□□ -0.34
CLK1P49759 PCDHB2-201ENST00000194155 4126 ntAPPRIS P1 BASIC12.91□□□□□ -0.34
CLK1P49759 PPP1R10-201ENST00000376511 4525 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CLK1P49759 KRT17P5-202ENST00000444070 2552 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CLK1P49759 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
CLK1P49759 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
CLK1P49759 HAS3-202ENST00000306560 4220 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CLK1P49759 LINC00511-213ENST00000581549 2265 ntTSL 2 BASIC12.91□□□□□ -0.34
CLK1P49759 SPAG5-AS1-201ENST00000414744 2143 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CLK1P49759 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CLK1P49759 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC12.91□□□□□ -0.34
CLK1P49759 WDR81-205ENST00000437219 3184 ntTSL 2 BASIC12.91□□□□□ -0.34
CLK1P49759 H1FX-AS1-201ENST00000383461 2600 ntTSL 2 BASIC12.91□□□□□ -0.34
CLK1P49759 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC12.91□□□□□ -0.34
CLK1P49759 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
CLK1P49759 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CLK1P49759 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC12.91□□□□□ -0.34
CLK1P49759 AGER-203ENST00000375065 665 ntTSL 2 BASIC12.91□□□□□ -0.34
CLK1P49759 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CLK1P49759 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
CLK1P49759 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC12.91□□□□□ -0.34
CLK1P49759 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC12.91□□□□□ -0.34
CLK1P49759 EIF4HP1-201ENST00000453115 687 ntBASIC12.91□□□□□ -0.34
CLK1P49759 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC12.91□□□□□ -0.34
CLK1P49759 ARTN-209ENST00000479128 471 ntTSL 3 BASIC12.91□□□□□ -0.34
CLK1P49759 RHEB-207ENST00000496004 744 ntTSL 2 BASIC12.91□□□□□ -0.34
CLK1P49759 RCC2P8-201ENST00000502779 1035 ntBASIC12.91□□□□□ -0.34
CLK1P49759 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
CLK1P49759 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 58.4 ms