Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HMGB1P09429 AC112721.1-201ENST00000409162 588 ntTSL 3 BASIC16.06■□□□□ 0.16
HMGB1P09429 AL139241.1-201ENST00000433374 1168 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HMGB1P09429 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC16.06■□□□□ 0.16
HMGB1P09429 EEF1DP6-201ENST00000449232 372 ntBASIC16.06■□□□□ 0.16
HMGB1P09429 C3orf35-206ENST00000452017 513 ntAPPRIS P5 TSL 5 BASIC16.06■□□□□ 0.16
HMGB1P09429 AC019118.1-201ENST00000454530 435 ntTSL 3 BASIC16.06■□□□□ 0.16
HMGB1P09429 AC006529.1-201ENST00000459978 637 ntBASIC16.06■□□□□ 0.16
HMGB1P09429 SOX2-OT-208ENST00000477928 902 ntTSL 2 BASIC16.06■□□□□ 0.16
HMGB1P09429 AC034231.1-201ENST00000507251 537 ntTSL 4 BASIC16.06■□□□□ 0.16
HMGB1P09429 AL137779.3-201ENST00000553295 729 ntBASIC16.06■□□□□ 0.16
HMGB1P09429 AC020659.1-202ENST00000564432 531 ntTSL 5 BASIC16.06■□□□□ 0.16
HMGB1P09429 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC16.06■□□□□ 0.16
HMGB1P09429 AP001269.2-201ENST00000590055 379 ntTSL 3 BASIC16.06■□□□□ 0.16
HMGB1P09429 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC16.06■□□□□ 0.16
HMGB1P09429 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC16.06■□□□□ 0.16
HMGB1P09429 ARHGAP21-217ENST00000612832 5514 ntTSL 5 BASIC16.06■□□□□ 0.16
HMGB1P09429 TMEM182-202ENST00000409528 3112 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HMGB1P09429 GRIA3-208ENST00000620581 2991 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HMGB1P09429 DNAJC14-202ENST00000317287 2774 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
HMGB1P09429 NTSR1-201ENST00000370501 4132 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HMGB1P09429 EPS8L3-201ENST00000361852 2130 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HMGB1P09429 KCNIP2-203ENST00000348850 2089 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HMGB1P09429 NDUFAF6-201ENST00000396111 1869 ntTSL 5 BASIC16.05■□□□□ 0.16
HMGB1P09429 CARD10-203ENST00000406271 3127 ntTSL 2 BASIC16.05■□□□□ 0.16
HMGB1P09429 DDX19B-208ENST00000563392 1760 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HMGB1P09429 ZMYND10-201ENST00000231749 2896 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
HMGB1P09429 MYO9A-202ENST00000424560 4008 ntTSL 5 BASIC16.05■□□□□ 0.16
HMGB1P09429 LINC01833-203ENST00000437916 2880 ntTSL 3 BASIC16.05■□□□□ 0.16
HMGB1P09429 SPHK2-206ENST00000598088 2866 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
HMGB1P09429 AC025594.2-201ENST00000609480 3902 ntAPPRIS P1 TSL 3 BASIC16.05■□□□□ 0.16
HMGB1P09429 ETNPPL-206ENST00000510706 1692 ntTSL 2 BASIC16.05■□□□□ 0.16
HMGB1P09429 TJAP1-208ENST00000438588 2716 ntTSL 5 BASIC16.05■□□□□ 0.16
HMGB1P09429 CFAP36-204ENST00000406691 1575 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HMGB1P09429 EDNRB-204ENST00000626030 1571 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HMGB1P09429 NTM-206ENST00000427481 2583 ntTSL 5 BASIC16.05■□□□□ 0.16
HMGB1P09429 RREB1-210ENST00000611109 3563 ntTSL 5 BASIC16.05■□□□□ 0.16
HMGB1P09429 STX16-NPEPL1-202ENST00000530122 3433 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
HMGB1P09429 SLC46A1-208ENST00000618626 5363 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HMGB1P09429 DDX31-202ENST00000372153 3285 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
HMGB1P09429 NLRP7-209ENST00000592784 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
HMGB1P09429 RGS9-210ENST00000635833 2308 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
HMGB1P09429 ZSCAN32-202ENST00000396846 3173 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HMGB1P09429 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HMGB1P09429 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HMGB1P09429 TNNT2-202ENST00000360372 969 ntTSL 5 BASIC16.05■□□□□ 0.16
HMGB1P09429 TNNT2-204ENST00000367317 1050 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
HMGB1P09429 SNU13-204ENST00000402458 462 ntTSL 3 BASIC16.05■□□□□ 0.16
HMGB1P09429 TNNT2-209ENST00000421663 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
HMGB1P09429 FAM212B-AS1-201ENST00000430373 2131 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HMGB1P09429 AL157788.1-201ENST00000437838 229 ntTSL 3 BASIC16.05■□□□□ 0.16
HMGB1P09429 AL512288.1-201ENST00000448015 491 ntTSL 5 BASIC16.05■□□□□ 0.16
HMGB1P09429 AP000911.2-201ENST00000534330 502 ntBASIC16.05■□□□□ 0.16
HMGB1P09429 C11orf97-201ENST00000542198 701 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
HMGB1P09429 AC105129.2-201ENST00000559536 390 ntBASIC16.05■□□□□ 0.16
HMGB1P09429 AC068867.1-201ENST00000559855 150 ntBASIC16.05■□□□□ 0.16
HMGB1P09429 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC16.05■□□□□ 0.16
HMGB1P09429 C19orf53-202ENST00000588234 873 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HMGB1P09429 AC009264.1-206ENST00000592183 534 ntTSL 4 BASIC16.05■□□□□ 0.16
HMGB1P09429 C15orf59-AS1-202ENST00000615095 1224 ntTSL 5 BASIC16.05■□□□□ 0.16
HMGB1P09429 AC026120.2-201ENST00000617239 309 ntBASIC16.05■□□□□ 0.16
HMGB1P09429 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC16.05■□□□□ 0.16
HMGB1P09429 AC025262.2-201ENST00000623975 1056 ntBASIC16.05■□□□□ 0.16
HMGB1P09429 WLS-201ENST00000262348 2748 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HMGB1P09429 DSN1-201ENST00000373734 1915 ntTSL 2 BASIC16.05■□□□□ 0.16
HMGB1P09429 HSPA8P9-201ENST00000485881 1943 ntBASIC16.05■□□□□ 0.16
HMGB1P09429 PRMT7-201ENST00000339507 4238 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
HMGB1P09429 CCDC142-202ENST00000393965 3406 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
HMGB1P09429 MRRF-201ENST00000297908 1841 ntTSL 2 BASIC16.05■□□□□ 0.16
HMGB1P09429 EHMT2-203ENST00000375537 3965 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
HMGB1P09429 MAMDC4-202ENST00000445819 3895 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
HMGB1P09429 RAB40A-202ENST00000372633 3126 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
HMGB1P09429 SMC6-201ENST00000351948 5173 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HMGB1P09429 ABCB7-203ENST00000373394 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HMGB1P09429 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HMGB1P09429 CAP2-209ENST00000616440 2776 ntTSL 2 BASIC16.04■□□□□ 0.16
HMGB1P09429 TUBB8P7-202ENST00000564451 2115 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HMGB1P09429 MTUS1-204ENST00000381869 6256 ntTSL 5 BASIC16.04■□□□□ 0.16
HMGB1P09429 AL022323.5-201ENST00000624101 2059 ntBASIC16.04■□□□□ 0.16
HMGB1P09429 CCDC51-206ENST00000447018 1461 ntTSL 2 BASIC16.04■□□□□ 0.16
HMGB1P09429 ACADM-202ENST00000370841 2619 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
HMGB1P09429 HAL-202ENST00000538703 2637 ntTSL 2 BASIC16.04■□□□□ 0.16
HMGB1P09429 RCBTB2-205ENST00000544492 2622 ntTSL 2 BASIC16.04■□□□□ 0.16
HMGB1P09429 AC036108.2-201ENST00000566974 2562 ntTSL 2 BASIC16.04■□□□□ 0.16
HMGB1P09429 C11orf87-201ENST00000327419 5884 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HMGB1P09429 CILP2-201ENST00000291495 4199 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
HMGB1P09429 TIPARP-201ENST00000295924 4109 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HMGB1P09429 LGALS9-201ENST00000302228 3018 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HMGB1P09429 TEX35-204ENST00000367642 2452 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
HMGB1P09429 VPS52-212ENST00000445902 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HMGB1P09429 AC134312.1-201ENST00000378417 3468 ntTSL 2 BASIC16.04■□□□□ 0.16
HMGB1P09429 BCCIP-202ENST00000299130 2337 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HMGB1P09429 UBE2W-201ENST00000419880 2315 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HMGB1P09429 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HMGB1P09429 TOMM20L-201ENST00000360945 620 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HMGB1P09429 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HMGB1P09429 PPIL3-205ENST00000409449 756 ntTSL 5 BASIC16.04■□□□□ 0.16
HMGB1P09429 RPL15-205ENST00000415719 830 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
HMGB1P09429 TMEM106A-201ENST00000536052 1181 ntTSL 2 BASIC16.04■□□□□ 0.16
HMGB1P09429 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms