Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 RN7SKP195-201ENST00000516587 303 ntBASIC13.46□□□□□ -0.25
COL6A3P12111 AC009901.2-201ENST00000521595 240 ntBASIC13.46□□□□□ -0.25
COL6A3P12111 FAM76A-207ENST00000530324 1027 ntAPPRIS ALT1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL6A3P12111 CYB561A3-213ENST00000539890 572 ntTSL 4 BASIC13.46□□□□□ -0.25
COL6A3P12111 RN7SL732P-201ENST00000581157 300 ntBASIC13.46□□□□□ -0.25
COL6A3P12111 SNHG5-211ENST00000587692 1029 ntTSL 3 BASIC13.46□□□□□ -0.25
COL6A3P12111 C19orf53-202ENST00000588234 873 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL6A3P12111 AL589826.2-201ENST00000635423 993 ntTSL 5 BASIC13.46□□□□□ -0.25
COL6A3P12111 ZNRF3-202ENST00000406323 2878 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL6A3P12111 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.25
COL6A3P12111 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC13.46□□□□□ -0.25
COL6A3P12111 LEMD2-207ENST00000508327 1306 ntTSL 2 BASIC13.46□□□□□ -0.25
COL6A3P12111 ZFAND1-201ENST00000220669 1798 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL6A3P12111 ZFAND1-221ENST00000523096 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL6A3P12111 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL6A3P12111 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL6A3P12111 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.25
COL6A3P12111 OMA1-201ENST00000371226 1935 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL6A3P12111 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL6A3P12111 RPL36AL-201ENST00000298289 746 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL6A3P12111 OR2T32P-201ENST00000403423 963 ntBASIC13.46□□□□□ -0.25
COL6A3P12111 BX664727.2-201ENST00000420308 228 ntBASIC13.46□□□□□ -0.25
COL6A3P12111 SGCZ-202ENST00000421524 867 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
COL6A3P12111 PTPN2P2-201ENST00000433704 1024 ntBASIC13.46□□□□□ -0.25
COL6A3P12111 AL450326.1-201ENST00000442526 760 ntTSL 2 BASIC13.46□□□□□ -0.25
COL6A3P12111 AC079804.3-201ENST00000508367 1000 ntBASIC13.46□□□□□ -0.25
COL6A3P12111 AC139495.2-201ENST00000514492 1087 ntBASIC13.46□□□□□ -0.25
COL6A3P12111 SLC25A51P3-201ENST00000521814 889 ntBASIC13.46□□□□□ -0.25
COL6A3P12111 AC010761.4-201ENST00000577325 521 ntTSL 3 BASIC13.46□□□□□ -0.25
COL6A3P12111 CR848007.3-201ENST00000615762 228 ntBASIC13.46□□□□□ -0.25
COL6A3P12111 AL513478.1-201ENST00000621265 228 ntBASIC13.46□□□□□ -0.25
COL6A3P12111 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC13.46□□□□□ -0.25
COL6A3P12111 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL6A3P12111 NIF3L1-201ENST00000359683 1626 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
COL6A3P12111 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL6A3P12111 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL6A3P12111 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL6A3P12111 ALDOA-213ENST00000564595 1663 ntTSL 2 BASIC13.46□□□□□ -0.25
COL6A3P12111 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL6A3P12111 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL6A3P12111 AOC1-201ENST00000360937 2649 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL6A3P12111 WARS-203ENST00000358655 2466 ntTSL 2 BASIC13.46□□□□□ -0.26
COL6A3P12111 CMTM2-201ENST00000268595 1054 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.26
COL6A3P12111 AREG-201ENST00000395748 1240 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
COL6A3P12111 AL356417.2-201ENST00000419064 395 ntTSL 2 BASIC13.46□□□□□ -0.26
COL6A3P12111 AC138305.1-201ENST00000568932 561 ntTSL 5 BASIC13.46□□□□□ -0.26
COL6A3P12111 AFMID-208ENST00000588800 647 ntTSL 2 BASIC13.46□□□□□ -0.26
COL6A3P12111 RN7SL1-201ENST00000618786 299 ntBASIC13.46□□□□□ -0.26
COL6A3P12111 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
COL6A3P12111 ELMOD3-201ENST00000315658 2685 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
COL6A3P12111 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.26
COL6A3P12111 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC13.46□□□□□ -0.26
COL6A3P12111 RIN2-202ENST00000440354 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.26
COL6A3P12111 SLC26A8-202ENST00000394602 3144 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
COL6A3P12111 SERINC3-201ENST00000255175 1726 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
COL6A3P12111 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL6A3P12111 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
COL6A3P12111 STT3A-211ENST00000529196 2402 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL6A3P12111 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC13.45□□□□□ -0.26
COL6A3P12111 GMPR2-201ENST00000348719 1684 ntTSL 5 BASIC13.45□□□□□ -0.26
COL6A3P12111 METTL1-201ENST00000257848 1096 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
COL6A3P12111 AC111200.1-201ENST00000358778 657 ntBASIC13.45□□□□□ -0.26
COL6A3P12111 SNORA52-201ENST00000362915 134 ntBASIC13.45□□□□□ -0.26
COL6A3P12111 PGAM1P4-201ENST00000397343 750 ntBASIC13.45□□□□□ -0.26
COL6A3P12111 KANK1P1-201ENST00000400619 1234 ntBASIC13.45□□□□□ -0.26
COL6A3P12111 MAPT-207ENST00000420682 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL6A3P12111 MAPT-208ENST00000431008 1233 ntTSL 5 BASIC13.45□□□□□ -0.26
COL6A3P12111 AC233724.12-201ENST00000512227 594 ntAPPRIS P1 BASIC13.45□□□□□ -0.26
COL6A3P12111 RPSAP71-201ENST00000522496 872 ntBASIC13.45□□□□□ -0.26
COL6A3P12111 AC023078.3-201ENST00000527463 958 ntBASIC13.45□□□□□ -0.26
COL6A3P12111 OR4C3-202ENST00000611380 597 ntBASIC13.45□□□□□ -0.26
COL6A3P12111 FAM74A7-201ENST00000613652 727 ntTSL 5 BASIC13.45□□□□□ -0.26
COL6A3P12111 UROD-222ENST00000636836 1173 ntTSL 5 BASIC13.45□□□□□ -0.26
COL6A3P12111 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
COL6A3P12111 MRFAP1L1-201ENST00000320848 1593 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL6A3P12111 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC13.45□□□□□ -0.26
COL6A3P12111 NR1H3-201ENST00000395397 1501 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
COL6A3P12111 MST1P2-201ENST00000457982 2291 ntBASIC13.45□□□□□ -0.26
COL6A3P12111 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL6A3P12111 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC13.45□□□□□ -0.26
COL6A3P12111 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
COL6A3P12111 RNU4-8P-201ENST00000364936 141 ntBASIC13.45□□□□□ -0.26
COL6A3P12111 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
COL6A3P12111 IGKV3D-20-201ENST00000390270 445 ntAPPRIS P1 BASIC13.45□□□□□ -0.26
COL6A3P12111 IGKV3-20-201ENST00000492167 400 ntAPPRIS P1 BASIC13.45□□□□□ -0.26
COL6A3P12111 IL18-202ENST00000524595 1090 ntAPPRIS ALT1 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL6A3P12111 RRN3-206ENST00000564131 1001 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
COL6A3P12111 AC079336.3-201ENST00000577227 475 ntTSL 3 BASIC13.45□□□□□ -0.26
COL6A3P12111 AL513485.1-201ENST00000617915 845 ntBASIC13.45□□□□□ -0.26
COL6A3P12111 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC13.45□□□□□ -0.26
COL6A3P12111 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
COL6A3P12111 APCDD1L-AS1-203ENST00000427140 2092 ntTSL 2 BASIC13.45□□□□□ -0.26
COL6A3P12111 CLUHP8-201ENST00000547527 1485 ntBASIC13.45□□□□□ -0.26
COL6A3P12111 AC116903.2-201ENST00000561674 1304 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
COL6A3P12111 SRL-202ENST00000537996 1814 ntTSL 2 BASIC13.45□□□□□ -0.26
COL6A3P12111 KLKP1-203ENST00000600104 1532 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
COL6A3P12111 CLEC4F-202ENST00000426626 2012 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL6A3P12111 PRF1-202ENST00000441259 2533 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
COL6A3P12111 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL6A3P12111 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 85.9 ms