Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 CTBP2P5-201ENST00000454986 1264 ntBASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 SEC61B-203ENST00000498603 587 ntTSL 3 BASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 FADS2-212ENST00000522639 360 ntTSL 5 BASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 RNF41-210ENST00000552244 716 ntTSL 3 BASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 SPCS2P1-201ENST00000561636 679 ntBASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 AC093752.3-201ENST00000567343 901 ntBASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 FADS2-215ENST00000574708 385 ntTSL 3 BASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 MIR3615-201ENST00000581999 87 ntBASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 AC005324.6-201ENST00000587972 613 ntBASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 AC079336.7-201ENST00000623428 1078 ntBASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 PRMT7-201ENST00000339507 4238 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 ACSL4-202ENST00000348502 5032 ntAPPRIS ALT1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 LINC00523-206ENST00000556697 2071 ntTSL 2 BASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 TEX35-203ENST00000367641 2377 ntAPPRIS ALT2 TSL 2 BASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 SRP72-205ENST00000510663 2473 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 PLEKHA2-207ENST00000616834 3594 ntTSL 5 BASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 SEC24B-202ENST00000399100 3780 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 FBLN2-207ENST00000492059 4193 ntAPPRIS P4 TSL 2 BASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 PIK3CG-205ENST00000496166 5197 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 KCNS2-202ENST00000521839 4340 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 TMEM182-202ENST00000409528 3112 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 ZNF384-204ENST00000396801 3008 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 VENTX-201ENST00000325980 2911 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 LGALS3BP-201ENST00000262776 2405 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 AL354861.3-201ENST00000600140 2412 ntBASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 PRKACB-205ENST00000370688 1905 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 NOSTRIN-203ENST00000397209 1437 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 SYNJ2-208ENST00000640338 3959 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 MEGF11-201ENST00000288745 5707 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
CCDC28BQ9BUN5 TTC4-201ENST00000371281 2395 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CCDC28BQ9BUN5 JAKMIP3-201ENST00000298622 6626 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
CCDC28BQ9BUN5 LINC01749-202ENST00000607802 3408 ntTSL 2 BASIC13.38□□□□□ -0.27
CCDC28BQ9BUN5 API5-208ENST00000531273 1868 ntTSL 2 BASIC13.38□□□□□ -0.27
CCDC28BQ9BUN5 GOLGA8T-202ENST00000569052 1896 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
CCDC28BQ9BUN5 GPN1-211ENST00000610189 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
CCDC28BQ9BUN5 ATXN2L-205ENST00000395547 3981 ntAPPRIS P4 TSL 1 (best) BASIC13.38□□□□□ -0.27
CCDC28BQ9BUN5 SETMAR-205ENST00000425863 1657 ntTSL 2 BASIC13.38□□□□□ -0.27
CCDC28BQ9BUN5 LINC00943-204ENST00000537374 1688 ntTSL 5 BASIC13.38□□□□□ -0.27
CCDC28BQ9BUN5 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
CCDC28BQ9BUN5 STAT3-202ENST00000389272 2615 ntTSL 2 BASIC13.38□□□□□ -0.27
CCDC28BQ9BUN5 SESN2-201ENST00000253063 3453 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CCDC28BQ9BUN5 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC13.38□□□□□ -0.27
CCDC28BQ9BUN5 SPINT1-201ENST00000344051 3056 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
CCDC28BQ9BUN5 FP325330.2-201ENST00000624219 5630 ntBASIC13.38□□□□□ -0.27
CCDC28BQ9BUN5 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CCDC28BQ9BUN5 BAX-205ENST00000391871 687 ntTSL 5 BASIC13.38□□□□□ -0.27
CCDC28BQ9BUN5 MPV17-206ENST00000402722 827 ntTSL 3 BASIC13.38□□□□□ -0.27
CCDC28BQ9BUN5 LY6G6E-227ENST00000409239 776 ntAPPRIS ALT2 TSL 4 BASIC13.38□□□□□ -0.27
CCDC28BQ9BUN5 BX679664.3-201ENST00000414070 555 ntBASIC13.38□□□□□ -0.27
CCDC28BQ9BUN5 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC13.38□□□□□ -0.27
CCDC28BQ9BUN5 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC13.38□□□□□ -0.27
CCDC28BQ9BUN5 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
CCDC28BQ9BUN5 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC13.38□□□□□ -0.27
CCDC28BQ9BUN5 AC113935.1-201ENST00000471722 555 ntBASIC13.38□□□□□ -0.27
CCDC28BQ9BUN5 RN7SL277P-201ENST00000481521 288 ntBASIC13.38□□□□□ -0.27
CCDC28BQ9BUN5 HLA-J-204ENST00000495278 958 ntBASIC13.38□□□□□ -0.27
CCDC28BQ9BUN5 AC005740.1-201ENST00000515639 522 ntBASIC13.38□□□□□ -0.27
CCDC28BQ9BUN5 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC13.38□□□□□ -0.27
CCDC28BQ9BUN5 AC079316.1-201ENST00000548397 411 ntBASIC13.38□□□□□ -0.27
CCDC28BQ9BUN5 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC13.38□□□□□ -0.27
CCDC28BQ9BUN5 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC13.38□□□□□ -0.27
CCDC28BQ9BUN5 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC13.38□□□□□ -0.27
CCDC28BQ9BUN5 HNRNPA1P48-202ENST00000565308 961 ntBASIC13.38□□□□□ -0.27
CCDC28BQ9BUN5 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC13.38□□□□□ -0.27
CCDC28BQ9BUN5 COX11-202ENST00000571584 1108 ntTSL 2 BASIC13.38□□□□□ -0.27
CCDC28BQ9BUN5 MIR4745-201ENST00000577608 62 ntBASIC13.38□□□□□ -0.27
CCDC28BQ9BUN5 AC008687.7-202ENST00000637404 953 ntBASIC13.38□□□□□ -0.27
CCDC28BQ9BUN5 RBM22P2-201ENST00000393978 1814 ntBASIC13.38□□□□□ -0.27
CCDC28BQ9BUN5 SLC39A6-204ENST00000590986 3003 ntAPPRIS P3 TSL 5 BASIC13.38□□□□□ -0.27
CCDC28BQ9BUN5 SLC20A2-207ENST00000520179 2284 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CCDC28BQ9BUN5 CUL4A-203ENST00000375441 4037 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
CCDC28BQ9BUN5 AC138150.2-201ENST00000589796 2053 ntTSL 2 BASIC13.38□□□□□ -0.27
CCDC28BQ9BUN5 ANXA8-205ENST00000585281 1960 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CCDC28BQ9BUN5 GOLGA7B-203ENST00000596005 6378 ntTSL 2 BASIC13.38□□□□□ -0.27
CCDC28BQ9BUN5 BDH1-203ENST00000392379 3546 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
CCDC28BQ9BUN5 VPS33B-202ENST00000535906 2420 ntTSL 2 BASIC13.38□□□□□ -0.27
CCDC28BQ9BUN5 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC13.38□□□□□ -0.27
CCDC28BQ9BUN5 LARGE1-203ENST00000402320 3955 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
CCDC28BQ9BUN5 KLC4-201ENST00000259708 2688 ntAPPRIS P4 TSL 2 BASIC13.37□□□□□ -0.27
CCDC28BQ9BUN5 BORA-202ENST00000377815 1673 ntAPPRIS ALT2 TSL 2 BASIC13.37□□□□□ -0.27
CCDC28BQ9BUN5 AC040160.2-201ENST00000623816 1675 ntBASIC13.37□□□□□ -0.27
CCDC28BQ9BUN5 AC145098.2-201ENST00000623593 3026 ntBASIC13.37□□□□□ -0.27
CCDC28BQ9BUN5 ADM2-202ENST00000395738 4276 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC28BQ9BUN5 FMO1-203ENST00000402921 2003 ntTSL 2 BASIC13.37□□□□□ -0.27
CCDC28BQ9BUN5 INCENP-202ENST00000394818 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC28BQ9BUN5 LPP-AS2-201ENST00000605573 2852 ntBASIC13.37□□□□□ -0.27
CCDC28BQ9BUN5 UAP1L1-201ENST00000360271 3201 ntTSL 2 BASIC13.37□□□□□ -0.27
CCDC28BQ9BUN5 LINC00662-206ENST00000590523 2053 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC28BQ9BUN5 ZNF568-201ENST00000333987 2441 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms