Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 HFE-203ENST00000336625 804 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
PDLIM3Q53GG5 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC11.58□□□□□ -0.56
PDLIM3Q53GG5 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
PDLIM3Q53GG5 CMC4-201ENST00000369479 864 ntAPPRIS P1 TSL 3 BASIC11.58□□□□□ -0.56
PDLIM3Q53GG5 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC11.58□□□□□ -0.56
PDLIM3Q53GG5 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
PDLIM3Q53GG5 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
PDLIM3Q53GG5 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC11.58□□□□□ -0.56
PDLIM3Q53GG5 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC11.58□□□□□ -0.56
PDLIM3Q53GG5 AC136604.1-202ENST00000425471 771 ntBASIC11.58□□□□□ -0.56
PDLIM3Q53GG5 CSNK1A1P1-201ENST00000430593 2147 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
PDLIM3Q53GG5 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
PDLIM3Q53GG5 KRT18P15-201ENST00000458108 1291 ntBASIC11.58□□□□□ -0.56
PDLIM3Q53GG5 TP53AIP1-201ENST00000458238 777 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
PDLIM3Q53GG5 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC11.58□□□□□ -0.56
PDLIM3Q53GG5 AC091179.2-201ENST00000495536 532 ntTSL 3 BASIC11.58□□□□□ -0.56
PDLIM3Q53GG5 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC11.58□□□□□ -0.56
PDLIM3Q53GG5 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC11.58□□□□□ -0.56
PDLIM3Q53GG5 IGHVIII-5-2-201ENST00000522505 261 ntBASIC11.58□□□□□ -0.56
PDLIM3Q53GG5 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC11.58□□□□□ -0.56
PDLIM3Q53GG5 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC11.58□□□□□ -0.56
PDLIM3Q53GG5 AC011603.2-203ENST00000547387 897 ntTSL 3 BASIC11.58□□□□□ -0.56
PDLIM3Q53GG5 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC11.58□□□□□ -0.56
PDLIM3Q53GG5 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
PDLIM3Q53GG5 DNM1P51-201ENST00000558149 522 ntBASIC11.58□□□□□ -0.56
PDLIM3Q53GG5 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC11.58□□□□□ -0.56
PDLIM3Q53GG5 GOLGA8IP-202ENST00000611635 2100 ntBASIC11.58□□□□□ -0.56
PDLIM3Q53GG5 FUBP1-203ENST00000370768 2378 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
PDLIM3Q53GG5 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
PDLIM3Q53GG5 CCDC117-201ENST00000249064 3985 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
PDLIM3Q53GG5 PAX8-203ENST00000348715 3966 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
PDLIM3Q53GG5 SPHK2-206ENST00000598088 2866 ntAPPRIS P3 TSL 1 (best) BASIC11.58□□□□□ -0.56
PDLIM3Q53GG5 TNNI1-201ENST00000336092 1750 ntAPPRIS P2 TSL 5 BASIC11.58□□□□□ -0.56
PDLIM3Q53GG5 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC11.58□□□□□ -0.56
PDLIM3Q53GG5 TUBB8-206ENST00000568584 1790 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
PDLIM3Q53GG5 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC11.58□□□□□ -0.56
PDLIM3Q53GG5 TWSG1-201ENST00000262120 3756 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
PDLIM3Q53GG5 SRRM1-201ENST00000323848 4011 ntAPPRIS P2 TSL 1 (best) BASIC11.58□□□□□ -0.56
PDLIM3Q53GG5 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC11.58□□□□□ -0.56
PDLIM3Q53GG5 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC11.58□□□□□ -0.56
PDLIM3Q53GG5 ABCA2-223ENST00000614293 8146 ntTSL 5 BASIC11.58□□□□□ -0.56
PDLIM3Q53GG5 CHRND-206ENST00000543200 2918 ntTSL 2 BASIC11.58□□□□□ -0.56
PDLIM3Q53GG5 TMEM63B-202ENST00000323267 3198 ntAPPRIS P1 TSL 5 BASIC11.58□□□□□ -0.56
PDLIM3Q53GG5 CHMP7-202ENST00000397677 3403 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
PDLIM3Q53GG5 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
PDLIM3Q53GG5 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC11.58□□□□□ -0.56
PDLIM3Q53GG5 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
PDLIM3Q53GG5 LDB3-204ENST00000372066 1598 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
PDLIM3Q53GG5 NPAP1-201ENST00000329468 7526 ntAPPRIS P1 BASIC11.58□□□□□ -0.56
PDLIM3Q53GG5 SLC26A6-213ENST00000455886 2460 ntTSL 2 BASIC11.58□□□□□ -0.56
PDLIM3Q53GG5 AC092123.2-201ENST00000611189 5421 ntBASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 AL023775.1-201ENST00000454907 1746 ntBASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 DLGAP4-202ENST00000340491 2392 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 BCAP29-201ENST00000005259 4572 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 OTP-201ENST00000306422 3669 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 MKRN1-201ENST00000255977 3151 ntAPPRIS P3 TSL 1 (best) BASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 RAP1GAP2-201ENST00000254695 6661 ntAPPRIS P4 TSL 1 (best) BASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 ABCD1P2-201ENST00000429313 1601 ntBASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 PLA2G3-201ENST00000215885 2697 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 ABCG8-201ENST00000272286 2665 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 PIK3AP1-201ENST00000339364 4803 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 VASH2-202ENST00000366964 2960 ntTSL 5 BASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 ATP6V0A4-202ENST00000353492 2709 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 BRSK2-207ENST00000528710 3528 ntTSL 2 BASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 ZNF419-202ENST00000347466 3654 ntAPPRIS P3 TSL 2 BASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 PROK2-201ENST00000295619 1022 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 TPM3P8-201ENST00000330554 643 ntBASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 BCAS2-201ENST00000369541 1299 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 ZFAND2B-205ENST00000409319 771 ntTSL 2 BASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 MIR503HG-202ENST00000440570 760 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 AL353637.1-201ENST00000451571 732 ntBASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 AC079112.1-201ENST00000454972 939 ntBASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 CEP164P1-201ENST00000455142 418 ntBASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 CICP12-201ENST00000455801 843 ntBASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 FXYD6-202ENST00000524656 1033 ntAPPRIS P2 TSL 3 BASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 AC012044.1-201ENST00000603431 297 ntBASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 AC018695.6-201ENST00000614011 534 ntBASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 ETV2-207ENST00000619399 994 ntTSL 5 BASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 FO393412.1-201ENST00000619841 382 ntBASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 AC027601.3-201ENST00000622907 509 ntBASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 AC002472.3-201ENST00000640124 621 ntBASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 ACADM-202ENST00000370841 2619 ntAPPRIS P3 TSL 1 (best) BASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 AC012349.1-201ENST00000518662 2643 ntTSL 2 BASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 LARGE1-203ENST00000402320 3955 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 CCT6B-201ENST00000314144 1838 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 ADAMTSL2-203ENST00000393061 4270 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 PSD-202ENST00000406432 3861 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 ZNF180-201ENST00000221327 4335 ntAPPRIS P3 TSL 1 (best) BASIC11.57□□□□□ -0.56
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms