Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 RPL18A-203ENST00000599870 1084 ntTSL 2 BASIC15.65■□□□□ 0.1
SMARCA1P28370 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SMARCA1P28370 SELENOW-212ENST00000601048 888 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SMARCA1P28370 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SMARCA1P28370 ATP1B3-201ENST00000286371 1811 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SMARCA1P28370 MGLL-202ENST00000398101 1414 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SMARCA1P28370 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
SMARCA1P28370 NGEF-201ENST00000264051 3215 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SMARCA1P28370 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC15.65■□□□□ 0.1
SMARCA1P28370 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SMARCA1P28370 SLC29A4-201ENST00000297195 2839 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SMARCA1P28370 SLC4A8-205ENST00000535225 2262 ntTSL 2 BASIC15.65■□□□□ 0.1
SMARCA1P28370 PRPF18-202ENST00000378572 1717 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SMARCA1P28370 AC025271.4-201ENST00000621477 1726 ntBASIC15.65■□□□□ 0.1
SMARCA1P28370 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC15.65■□□□□ 0.1
SMARCA1P28370 MC5R-201ENST00000324750 1319 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
SMARCA1P28370 AL359915.2-202ENST00000440150 2469 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SMARCA1P28370 DLX1-203ENST00000361725 2640 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.1
SMARCA1P28370 IP6K2-201ENST00000328631 1775 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.1
SMARCA1P28370 ITPRIPL1-204ENST00000439118 1946 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SMARCA1P28370 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC15.64■□□□□ 0.09
SMARCA1P28370 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SMARCA1P28370 AC009093.1-201ENST00000566070 2099 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SMARCA1P28370 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SMARCA1P28370 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SMARCA1P28370 GPER1-203ENST00000397092 2971 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
SMARCA1P28370 COQ4-201ENST00000300452 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SMARCA1P28370 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SMARCA1P28370 OLAH-203ENST00000378228 1675 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SMARCA1P28370 MRRF-201ENST00000297908 1841 ntTSL 2 BASIC15.64■□□□□ 0.09
SMARCA1P28370 AL137784.3-201ENST00000623858 2288 ntBASIC15.64■□□□□ 0.09
SMARCA1P28370 GDAP2-201ENST00000369442 2436 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SMARCA1P28370 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
SMARCA1P28370 OR2K2-201ENST00000302681 1078 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
SMARCA1P28370 KIR3DL1-203ENST00000391728 1871 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
SMARCA1P28370 SNCAIP-206ENST00000414317 1591 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SMARCA1P28370 LINC00028-201ENST00000435497 587 ntTSL 2 BASIC15.64■□□□□ 0.09
SMARCA1P28370 FAM138B-202ENST00000446648 1130 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SMARCA1P28370 FAM138C-202ENST00000449442 1126 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SMARCA1P28370 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SMARCA1P28370 SH3BGR-209ENST00000458295 812 ntTSL 3 BASIC15.64■□□□□ 0.09
SMARCA1P28370 RN7SL582P-201ENST00000491078 279 ntBASIC15.64■□□□□ 0.09
SMARCA1P28370 PARP8-218ENST00000513738 596 ntTSL 4 BASIC15.64■□□□□ 0.09
SMARCA1P28370 MPZL3-203ENST00000525386 973 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SMARCA1P28370 METTL7AP1-201ENST00000547343 496 ntBASIC15.64■□□□□ 0.09
SMARCA1P28370 AC073569.2-201ENST00000551995 354 ntTSL 5 BASIC15.64■□□□□ 0.09
SMARCA1P28370 AL136295.3-201ENST00000558325 850 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
SMARCA1P28370 IKBKE-201ENST00000578328 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
SMARCA1P28370 CCDC159-209ENST00000588790 1408 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
SMARCA1P28370 AC008972.2-201ENST00000606587 494 ntBASIC15.64■□□□□ 0.09
SMARCA1P28370 APOBEC3H-207ENST00000613996 465 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SMARCA1P28370 AC073578.2-201ENST00000618927 464 ntTSL 4 BASIC15.64■□□□□ 0.09
SMARCA1P28370 FAM138F-201ENST00000631376 1183 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SMARCA1P28370 MEG8-221ENST00000636391 2155 ntTSL 5 BASIC15.64■□□□□ 0.09
SMARCA1P28370 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SMARCA1P28370 PPP1R8-203ENST00000373931 2651 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SMARCA1P28370 KCNAB2-219ENST00000602612 2396 ntTSL 2 BASIC15.64■□□□□ 0.09
SMARCA1P28370 ITGB1BP1-201ENST00000238091 1772 ntTSL 3 BASIC15.64■□□□□ 0.09
SMARCA1P28370 SLC7A8-205ENST00000453702 1752 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SMARCA1P28370 HSD3B2-206ENST00000543831 1783 ntAPPRIS P1 TSL 3 BASIC15.64■□□□□ 0.09
SMARCA1P28370 ATP5A1-215ENST00000590665 1793 ntTSL 2 BASIC15.64■□□□□ 0.09
SMARCA1P28370 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
SMARCA1P28370 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
SMARCA1P28370 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SMARCA1P28370 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SMARCA1P28370 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
SMARCA1P28370 IGHG3-202ENST00000641136 2751 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
SMARCA1P28370 AC111188.1-201ENST00000525758 1833 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SMARCA1P28370 SRL-202ENST00000537996 1814 ntTSL 2 BASIC15.64■□□□□ 0.09
SMARCA1P28370 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SMARCA1P28370 FARS2-201ENST00000274680 1663 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SMARCA1P28370 KDM8-212ENST00000568965 1655 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
SMARCA1P28370 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
SMARCA1P28370 SLC52A1-203ENST00000512825 2989 ntTSL 2 BASIC15.63■□□□□ 0.09
SMARCA1P28370 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
SMARCA1P28370 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC15.63■□□□□ 0.09
SMARCA1P28370 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
SMARCA1P28370 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
SMARCA1P28370 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SMARCA1P28370 AP1G2-201ENST00000308724 3298 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SMARCA1P28370 SAP18-201ENST00000382533 2298 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
SMARCA1P28370 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC15.63■□□□□ 0.09
SMARCA1P28370 ZFP82-201ENST00000392161 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SMARCA1P28370 AC022080.1-201ENST00000366255 781 ntBASIC15.63■□□□□ 0.09
SMARCA1P28370 HNRNPA1P33-201ENST00000421426 561 ntBASIC15.63■□□□□ 0.09
SMARCA1P28370 AQP7P5-201ENST00000428759 1049 ntBASIC15.63■□□□□ 0.09
SMARCA1P28370 AQP7P4-201ENST00000447083 1042 ntBASIC15.63■□□□□ 0.09
SMARCA1P28370 AC074389.3-201ENST00000450458 454 ntTSL 3 BASIC15.63■□□□□ 0.09
SMARCA1P28370 AQP7P2-201ENST00000453967 1041 ntBASIC15.63■□□□□ 0.09
SMARCA1P28370 ZSCAN2-208ENST00000485222 910 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
SMARCA1P28370 RPL29P2-202ENST00000498671 657 ntBASIC15.63■□□□□ 0.09
SMARCA1P28370 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC15.63■□□□□ 0.09
SMARCA1P28370 AC087203.1-201ENST00000532111 1181 ntBASIC15.63■□□□□ 0.09
SMARCA1P28370 ZSCAN2-210ENST00000538076 1109 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
SMARCA1P28370 AC090617.6-201ENST00000572790 443 ntTSL 3 BASIC15.63■□□□□ 0.09
SMARCA1P28370 LINC01996-201ENST00000573270 1273 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
SMARCA1P28370 KXD1-211ENST00000599319 707 ntAPPRIS P1 TSL 3 BASIC15.63■□□□□ 0.09
SMARCA1P28370 AQP7P3-201ENST00000624547 1041 ntBASIC15.63■□□□□ 0.09
SMARCA1P28370 AC026336.4-201ENST00000624565 1050 ntBASIC15.63■□□□□ 0.09
SMARCA1P28370 LINC00431-202ENST00000636375 159 ntBASIC15.63■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms