Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
SHANK1Q9Y566 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
SHANK1Q9Y566 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.83
SHANK1Q9Y566 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC20.27■□□□□ 0.83
SHANK1Q9Y566 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
SHANK1Q9Y566 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
SHANK1Q9Y566 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SHANK1Q9Y566 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SHANK1Q9Y566 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SHANK1Q9Y566 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SHANK1Q9Y566 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SHANK1Q9Y566 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC20.26■□□□□ 0.83
SHANK1Q9Y566 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC20.26■□□□□ 0.83
SHANK1Q9Y566 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SHANK1Q9Y566 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
SHANK1Q9Y566 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SHANK1Q9Y566 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SHANK1Q9Y566 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC20.25■□□□□ 0.83
SHANK1Q9Y566 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
SHANK1Q9Y566 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SHANK1Q9Y566 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
SHANK1Q9Y566 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SHANK1Q9Y566 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
SHANK1Q9Y566 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC20.25■□□□□ 0.83
SHANK1Q9Y566 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
SHANK1Q9Y566 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC20.25■□□□□ 0.83
SHANK1Q9Y566 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SHANK1Q9Y566 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC20.25■□□□□ 0.83
SHANK1Q9Y566 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SHANK1Q9Y566 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC20.25■□□□□ 0.83
SHANK1Q9Y566 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SHANK1Q9Y566 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SHANK1Q9Y566 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC20.24■□□□□ 0.83
SHANK1Q9Y566 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
SHANK1Q9Y566 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
SHANK1Q9Y566 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SHANK1Q9Y566 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC20.24■□□□□ 0.83
SHANK1Q9Y566 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SHANK1Q9Y566 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC20.24■□□□□ 0.83
SHANK1Q9Y566 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC20.24■□□□□ 0.83
SHANK1Q9Y566 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
SHANK1Q9Y566 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
SHANK1Q9Y566 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
SHANK1Q9Y566 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SHANK1Q9Y566 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC20.23■□□□□ 0.83
SHANK1Q9Y566 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC20.23■□□□□ 0.83
SHANK1Q9Y566 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC20.23■□□□□ 0.83
SHANK1Q9Y566 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SHANK1Q9Y566 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC20.23■□□□□ 0.83
SHANK1Q9Y566 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SHANK1Q9Y566 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SHANK1Q9Y566 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC20.23■□□□□ 0.83
SHANK1Q9Y566 CDCA4P2-201ENST00000441182 718 ntBASIC20.22■□□□□ 0.83
SHANK1Q9Y566 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC20.22■□□□□ 0.83
SHANK1Q9Y566 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC20.22■□□□□ 0.83
SHANK1Q9Y566 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SHANK1Q9Y566 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SHANK1Q9Y566 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SHANK1Q9Y566 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
SHANK1Q9Y566 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SHANK1Q9Y566 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SHANK1Q9Y566 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC20.22■□□□□ 0.83
SHANK1Q9Y566 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC20.22■□□□□ 0.83
SHANK1Q9Y566 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC20.22■□□□□ 0.83
SHANK1Q9Y566 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SHANK1Q9Y566 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC20.22■□□□□ 0.83
SHANK1Q9Y566 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SHANK1Q9Y566 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC20.21■□□□□ 0.83
SHANK1Q9Y566 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SHANK1Q9Y566 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SHANK1Q9Y566 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SHANK1Q9Y566 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SHANK1Q9Y566 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SHANK1Q9Y566 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SHANK1Q9Y566 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
SHANK1Q9Y566 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SHANK1Q9Y566 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SHANK1Q9Y566 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SHANK1Q9Y566 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SHANK1Q9Y566 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SHANK1Q9Y566 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SHANK1Q9Y566 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SHANK1Q9Y566 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
SHANK1Q9Y566 AC022211.4-201ENST00000625094 2161 ntBASIC20.2■□□□□ 0.82
SHANK1Q9Y566 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC20.2■□□□□ 0.82
SHANK1Q9Y566 AC141586.4-201ENST00000624558 1573 ntBASIC20.2■□□□□ 0.82
SHANK1Q9Y566 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
SHANK1Q9Y566 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC20.2■□□□□ 0.82
SHANK1Q9Y566 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
SHANK1Q9Y566 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
SHANK1Q9Y566 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC20.2■□□□□ 0.82
SHANK1Q9Y566 GXYLT1P5-201ENST00000614548 1189 ntBASIC20.2■□□□□ 0.82
SHANK1Q9Y566 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SHANK1Q9Y566 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SHANK1Q9Y566 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SHANK1Q9Y566 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
SHANK1Q9Y566 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
SHANK1Q9Y566 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
SHANK1Q9Y566 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC20.2■□□□□ 0.82
SHANK1Q9Y566 AC133637.1-201ENST00000624115 1537 ntBASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms