Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC21.21■□□□□ 0.99
SCN3AQ9NY46 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC21.21■□□□□ 0.99
SCN3AQ9NY46 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC21.21■□□□□ 0.99
SCN3AQ9NY46 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SCN3AQ9NY46 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SCN3AQ9NY46 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SCN3AQ9NY46 AC241377.3-202ENST00000626088 1088 ntBASIC21.21■□□□□ 0.99
SCN3AQ9NY46 AC241585.3-202ENST00000628937 1088 ntBASIC21.21■□□□□ 0.99
SCN3AQ9NY46 AC245100.8-202ENST00000629247 1058 ntBASIC21.21■□□□□ 0.99
SCN3AQ9NY46 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC21.2■□□□□ 0.98
SCN3AQ9NY46 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SCN3AQ9NY46 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
SCN3AQ9NY46 DUX4L19-201ENST00000557448 1267 ntBASIC21.2■□□□□ 0.98
SCN3AQ9NY46 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
SCN3AQ9NY46 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SCN3AQ9NY46 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC21.19■□□□□ 0.98
SCN3AQ9NY46 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SCN3AQ9NY46 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
SCN3AQ9NY46 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SCN3AQ9NY46 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
SCN3AQ9NY46 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC21.19■□□□□ 0.98
SCN3AQ9NY46 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
SCN3AQ9NY46 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
SCN3AQ9NY46 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
SCN3AQ9NY46 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
SCN3AQ9NY46 GTSE1-AS1-202ENST00000623117 1518 ntBASIC21.19■□□□□ 0.98
SCN3AQ9NY46 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SCN3AQ9NY46 SERBP1P1-201ENST00000396021 1160 ntBASIC21.19■□□□□ 0.98
SCN3AQ9NY46 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SCN3AQ9NY46 SYT6-210ENST00000641643 1587 ntBASIC21.18■□□□□ 0.98
SCN3AQ9NY46 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SCN3AQ9NY46 NALT1-201ENST00000429224 738 ntTSL 5 BASIC21.18■□□□□ 0.98
SCN3AQ9NY46 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
SCN3AQ9NY46 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SCN3AQ9NY46 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
SCN3AQ9NY46 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC21.18■□□□□ 0.98
SCN3AQ9NY46 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SCN3AQ9NY46 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC21.17■□□□□ 0.98
SCN3AQ9NY46 AC024257.2-201ENST00000549699 147 ntBASIC21.17■□□□□ 0.98
SCN3AQ9NY46 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC21.17■□□□□ 0.98
SCN3AQ9NY46 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC21.17■□□□□ 0.98
SCN3AQ9NY46 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
SCN3AQ9NY46 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SCN3AQ9NY46 UNC93B3-201ENST00000308076 687 ntBASIC21.17■□□□□ 0.98
SCN3AQ9NY46 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SCN3AQ9NY46 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SCN3AQ9NY46 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
SCN3AQ9NY46 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC21.16■□□□□ 0.98
SCN3AQ9NY46 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC21.16■□□□□ 0.98
SCN3AQ9NY46 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC21.16■□□□□ 0.98
SCN3AQ9NY46 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
SCN3AQ9NY46 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SCN3AQ9NY46 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
SCN3AQ9NY46 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SCN3AQ9NY46 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
SCN3AQ9NY46 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SCN3AQ9NY46 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SCN3AQ9NY46 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
SCN3AQ9NY46 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
SCN3AQ9NY46 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC21.15■□□□□ 0.98
SCN3AQ9NY46 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC21.15■□□□□ 0.98
SCN3AQ9NY46 DUSP8P3-201ENST00000399571 1760 ntBASIC21.15■□□□□ 0.98
SCN3AQ9NY46 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC21.15■□□□□ 0.98
SCN3AQ9NY46 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC21.15■□□□□ 0.98
SCN3AQ9NY46 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC21.14■□□□□ 0.98
SCN3AQ9NY46 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
SCN3AQ9NY46 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC21.14■□□□□ 0.98
SCN3AQ9NY46 AC106739.1-201ENST00000617035 715 ntBASIC21.14■□□□□ 0.98
SCN3AQ9NY46 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SCN3AQ9NY46 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC21.14■□□□□ 0.97
SCN3AQ9NY46 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
SCN3AQ9NY46 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC21.14■□□□□ 0.97
SCN3AQ9NY46 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC21.14■□□□□ 0.97
SCN3AQ9NY46 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
SCN3AQ9NY46 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
SCN3AQ9NY46 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SCN3AQ9NY46 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
SCN3AQ9NY46 AL353803.4-201ENST00000565882 1934 ntBASIC21.13■□□□□ 0.97
SCN3AQ9NY46 SRD5A1P1-201ENST00000442297 786 ntBASIC21.13■□□□□ 0.97
SCN3AQ9NY46 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC21.13■□□□□ 0.97
SCN3AQ9NY46 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SCN3AQ9NY46 ME2-208ENST00000638937 2471 ntTSL 5 BASIC21.13■□□□□ 0.97
SCN3AQ9NY46 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SCN3AQ9NY46 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
SCN3AQ9NY46 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SCN3AQ9NY46 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
SCN3AQ9NY46 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SCN3AQ9NY46 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SCN3AQ9NY46 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
SCN3AQ9NY46 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC21.12■□□□□ 0.97
SCN3AQ9NY46 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
SCN3AQ9NY46 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
SCN3AQ9NY46 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SCN3AQ9NY46 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SCN3AQ9NY46 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SCN3AQ9NY46 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SCN3AQ9NY46 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC21.12■□□□□ 0.97
SCN3AQ9NY46 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC21.12■□□□□ 0.97
SCN3AQ9NY46 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SCN3AQ9NY46 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC21.11■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms