Protein–RNA interactions for Protein: Q99909

SSX3, Protein SSX3, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3Q99909 MTURN-203ENST00000409688 843 ntTSL 2 BASIC18.55■□□□□ 0.56
SSX3Q99909 STK32C-205ENST00000456004 607 ntTSL 2 BASIC18.55■□□□□ 0.56
SSX3Q99909 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC18.55■□□□□ 0.56
SSX3Q99909 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SSX3Q99909 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC18.55■□□□□ 0.56
SSX3Q99909 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC18.55■□□□□ 0.56
SSX3Q99909 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SSX3Q99909 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC18.55■□□□□ 0.56
SSX3Q99909 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SSX3Q99909 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
SSX3Q99909 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SSX3Q99909 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SSX3Q99909 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC18.55■□□□□ 0.56
SSX3Q99909 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SSX3Q99909 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SSX3Q99909 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SSX3Q99909 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC18.54■□□□□ 0.56
SSX3Q99909 CLTA-206ENST00000466396 695 ntTSL 2 BASIC18.54■□□□□ 0.56
SSX3Q99909 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC18.54■□□□□ 0.56
SSX3Q99909 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC18.54■□□□□ 0.56
SSX3Q99909 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
SSX3Q99909 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
SSX3Q99909 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC18.54■□□□□ 0.56
SSX3Q99909 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
SSX3Q99909 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC18.54■□□□□ 0.56
SSX3Q99909 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
SSX3Q99909 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
SSX3Q99909 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SSX3Q99909 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SSX3Q99909 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
SSX3Q99909 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
SSX3Q99909 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SSX3Q99909 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SSX3Q99909 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC18.53■□□□□ 0.56
SSX3Q99909 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SSX3Q99909 PEMT-206ENST00000435340 960 ntTSL 5 BASIC18.53■□□□□ 0.56
SSX3Q99909 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC18.53■□□□□ 0.56
SSX3Q99909 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC18.53■□□□□ 0.56
SSX3Q99909 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC18.53■□□□□ 0.56
SSX3Q99909 DUSP8P5-201ENST00000422884 1815 ntBASIC18.53■□□□□ 0.56
SSX3Q99909 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SSX3Q99909 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SSX3Q99909 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
SSX3Q99909 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SSX3Q99909 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
SSX3Q99909 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC18.52■□□□□ 0.56
SSX3Q99909 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
SSX3Q99909 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SSX3Q99909 AC131281.2-201ENST00000520478 145 ntBASIC18.52■□□□□ 0.56
SSX3Q99909 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SSX3Q99909 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SSX3Q99909 AL022069.1-201ENST00000568025 1636 ntBASIC18.52■□□□□ 0.55
SSX3Q99909 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC18.52■□□□□ 0.55
SSX3Q99909 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
SSX3Q99909 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SSX3Q99909 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SSX3Q99909 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SSX3Q99909 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC18.51■□□□□ 0.55
SSX3Q99909 AC131274.2-201ENST00000580697 1507 ntBASIC18.51■□□□□ 0.55
SSX3Q99909 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC18.51■□□□□ 0.55
SSX3Q99909 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SSX3Q99909 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
SSX3Q99909 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC18.51■□□□□ 0.55
SSX3Q99909 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
SSX3Q99909 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
SSX3Q99909 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC18.51■□□□□ 0.55
SSX3Q99909 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SSX3Q99909 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SSX3Q99909 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SSX3Q99909 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SSX3Q99909 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
SSX3Q99909 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC18.5■□□□□ 0.55
SSX3Q99909 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
SSX3Q99909 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SSX3Q99909 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SSX3Q99909 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SSX3Q99909 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
SSX3Q99909 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC18.5■□□□□ 0.55
SSX3Q99909 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC18.5■□□□□ 0.55
SSX3Q99909 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC18.5■□□□□ 0.55
SSX3Q99909 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC18.5■□□□□ 0.55
SSX3Q99909 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SSX3Q99909 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
SSX3Q99909 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC18.5■□□□□ 0.55
SSX3Q99909 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SSX3Q99909 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC18.5■□□□□ 0.55
SSX3Q99909 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
SSX3Q99909 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SSX3Q99909 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SSX3Q99909 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
SSX3Q99909 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SSX3Q99909 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SSX3Q99909 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC18.49■□□□□ 0.55
SSX3Q99909 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SSX3Q99909 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
SSX3Q99909 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SSX3Q99909 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SSX3Q99909 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC18.49■□□□□ 0.55
SSX3Q99909 C9orf163-202ENST00000624034 2573 ntBASIC18.49■□□□□ 0.55
SSX3Q99909 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 16.2 ms