Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
ABCA1O95477 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
ABCA1O95477 TERF1P2-201ENST00000583350 1212 ntBASIC18.63■□□□□ 0.57
ABCA1O95477 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC18.63■□□□□ 0.57
ABCA1O95477 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
ABCA1O95477 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
ABCA1O95477 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
ABCA1O95477 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
ABCA1O95477 TK2-208ENST00000545043 1120 ntTSL 2 BASIC18.63■□□□□ 0.57
ABCA1O95477 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
ABCA1O95477 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC18.63■□□□□ 0.57
ABCA1O95477 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
ABCA1O95477 ME3-201ENST00000323418 1068 ntTSL 5 BASIC18.62■□□□□ 0.57
ABCA1O95477 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC18.62■□□□□ 0.57
ABCA1O95477 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
ABCA1O95477 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
ABCA1O95477 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
ABCA1O95477 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
ABCA1O95477 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC18.62■□□□□ 0.57
ABCA1O95477 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC18.62■□□□□ 0.57
ABCA1O95477 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC18.62■□□□□ 0.57
ABCA1O95477 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
ABCA1O95477 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC18.62■□□□□ 0.57
ABCA1O95477 IGHV3-19-201ENST00000521488 291 ntBASIC18.62■□□□□ 0.57
ABCA1O95477 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC18.62■□□□□ 0.57
ABCA1O95477 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
ABCA1O95477 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
ABCA1O95477 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
ABCA1O95477 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
ABCA1O95477 pRNA.6-201ENST00000610482 90 ntBASIC18.61■□□□□ 0.57
ABCA1O95477 pRNA.5-201ENST00000612139 90 ntBASIC18.61■□□□□ 0.57
ABCA1O95477 pRNA.11-201ENST00000618423 90 ntBASIC18.61■□□□□ 0.57
ABCA1O95477 pRNA.13-201ENST00000619112 90 ntBASIC18.61■□□□□ 0.57
ABCA1O95477 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC18.61■□□□□ 0.57
ABCA1O95477 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
ABCA1O95477 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
ABCA1O95477 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC18.61■□□□□ 0.57
ABCA1O95477 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC18.61■□□□□ 0.57
ABCA1O95477 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
ABCA1O95477 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
ABCA1O95477 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC18.6■□□□□ 0.57
ABCA1O95477 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC18.6■□□□□ 0.57
ABCA1O95477 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
ABCA1O95477 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
ABCA1O95477 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
ABCA1O95477 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
ABCA1O95477 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC18.6■□□□□ 0.57
ABCA1O95477 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
ABCA1O95477 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
ABCA1O95477 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC18.6■□□□□ 0.57
ABCA1O95477 GXYLT1P2-201ENST00000433312 1230 ntBASIC18.6■□□□□ 0.57
ABCA1O95477 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
ABCA1O95477 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC18.6■□□□□ 0.57
ABCA1O95477 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
ABCA1O95477 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
ABCA1O95477 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
ABCA1O95477 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC18.59■□□□□ 0.57
ABCA1O95477 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
ABCA1O95477 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
ABCA1O95477 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC18.59■□□□□ 0.57
ABCA1O95477 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
ABCA1O95477 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
ABCA1O95477 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
ABCA1O95477 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
ABCA1O95477 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
ABCA1O95477 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC18.58■□□□□ 0.57
ABCA1O95477 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
ABCA1O95477 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
ABCA1O95477 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
ABCA1O95477 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
ABCA1O95477 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
ABCA1O95477 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
ABCA1O95477 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC18.58■□□□□ 0.56
ABCA1O95477 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC18.58■□□□□ 0.56
ABCA1O95477 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
ABCA1O95477 VPS53-216ENST00000574029 585 ntTSL 4 BASIC18.58■□□□□ 0.56
ABCA1O95477 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
ABCA1O95477 NTF6G-201ENST00000591094 616 ntBASIC18.58■□□□□ 0.56
ABCA1O95477 AL354811.1-201ENST00000610286 706 ntBASIC18.58■□□□□ 0.56
ABCA1O95477 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
ABCA1O95477 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
ABCA1O95477 AC138932.3-201ENST00000567634 1902 ntBASIC18.57■□□□□ 0.56
ABCA1O95477 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
ABCA1O95477 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC18.57■□□□□ 0.56
ABCA1O95477 AC016769.1-201ENST00000409132 1010 ntBASIC18.57■□□□□ 0.56
ABCA1O95477 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
ABCA1O95477 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC18.57■□□□□ 0.56
ABCA1O95477 MIR6084-201ENST00000622012 110 ntBASIC18.57■□□□□ 0.56
ABCA1O95477 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC18.57■□□□□ 0.56
ABCA1O95477 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
ABCA1O95477 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
ABCA1O95477 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
ABCA1O95477 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
ABCA1O95477 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
ABCA1O95477 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
ABCA1O95477 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
ABCA1O95477 MED17-227ENST00000640521 2047 ntTSL 5 BASIC18.57■□□□□ 0.56
ABCA1O95477 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
ABCA1O95477 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
ABCA1O95477 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 17 ms