Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
UPK1AO00322 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC21.21■□□□□ 0.99
UPK1AO00322 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
UPK1AO00322 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC21.21■□□□□ 0.99
UPK1AO00322 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.99
UPK1AO00322 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
UPK1AO00322 H19-210ENST00000439725 1929 ntTSL 2 BASIC21.2■□□□□ 0.98
UPK1AO00322 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
UPK1AO00322 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
UPK1AO00322 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
UPK1AO00322 AC239859.2-201ENST00000444165 318 ntBASIC21.2■□□□□ 0.98
UPK1AO00322 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC21.2■□□□□ 0.98
UPK1AO00322 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
UPK1AO00322 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
UPK1AO00322 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC21.2■□□□□ 0.98
UPK1AO00322 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
UPK1AO00322 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
UPK1AO00322 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC21.19■□□□□ 0.98
UPK1AO00322 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
UPK1AO00322 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
UPK1AO00322 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC21.19■□□□□ 0.98
UPK1AO00322 AC092028.1-203ENST00000608262 953 ntBASIC21.19■□□□□ 0.98
UPK1AO00322 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
UPK1AO00322 REST-206ENST00000612429 1376 ntTSL 5 BASIC21.19■□□□□ 0.98
UPK1AO00322 REST-207ENST00000616975 1370 ntTSL 5 BASIC21.19■□□□□ 0.98
UPK1AO00322 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
UPK1AO00322 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
UPK1AO00322 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
UPK1AO00322 EFS-203ENST00000429593 2610 ntTSL 2 BASIC21.19■□□□□ 0.98
UPK1AO00322 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
UPK1AO00322 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
UPK1AO00322 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC21.18■□□□□ 0.98
UPK1AO00322 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC21.18■□□□□ 0.98
UPK1AO00322 MIR4787-201ENST00000607364 84 ntBASIC21.18■□□□□ 0.98
UPK1AO00322 MIR6722-201ENST00000617286 78 ntBASIC21.18■□□□□ 0.98
UPK1AO00322 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC21.18■□□□□ 0.98
UPK1AO00322 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
UPK1AO00322 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
UPK1AO00322 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
UPK1AO00322 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
UPK1AO00322 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
UPK1AO00322 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
UPK1AO00322 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
UPK1AO00322 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
UPK1AO00322 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
UPK1AO00322 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
UPK1AO00322 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
UPK1AO00322 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
UPK1AO00322 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
UPK1AO00322 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
UPK1AO00322 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC21.17■□□□□ 0.98
UPK1AO00322 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
UPK1AO00322 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC21.17■□□□□ 0.98
UPK1AO00322 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
UPK1AO00322 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
UPK1AO00322 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
UPK1AO00322 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
UPK1AO00322 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
UPK1AO00322 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
UPK1AO00322 AC007375.3-201ENST00000600936 2314 ntBASIC21.17■□□□□ 0.98
UPK1AO00322 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
UPK1AO00322 USP48-205ENST00000421625 2818 ntTSL 2 BASIC21.16■□□□□ 0.98
UPK1AO00322 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
UPK1AO00322 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
UPK1AO00322 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
UPK1AO00322 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
UPK1AO00322 USF2-207ENST00000595068 1612 ntTSL 5 BASIC21.16■□□□□ 0.98
UPK1AO00322 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC21.16■□□□□ 0.98
UPK1AO00322 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
UPK1AO00322 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC21.16■□□□□ 0.98
UPK1AO00322 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC21.16■□□□□ 0.98
UPK1AO00322 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
UPK1AO00322 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
UPK1AO00322 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
UPK1AO00322 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
UPK1AO00322 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
UPK1AO00322 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
UPK1AO00322 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC21.15■□□□□ 0.98
UPK1AO00322 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
UPK1AO00322 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
UPK1AO00322 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
UPK1AO00322 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC21.14■□□□□ 0.98
UPK1AO00322 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
UPK1AO00322 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
UPK1AO00322 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC21.14■□□□□ 0.97
UPK1AO00322 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
UPK1AO00322 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
UPK1AO00322 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC21.14■□□□□ 0.97
UPK1AO00322 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC21.14■□□□□ 0.97
UPK1AO00322 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
UPK1AO00322 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
UPK1AO00322 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC21.13■□□□□ 0.97
UPK1AO00322 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
UPK1AO00322 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
UPK1AO00322 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
UPK1AO00322 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
UPK1AO00322 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC21.13■□□□□ 0.97
UPK1AO00322 CLTA-206ENST00000466396 695 ntTSL 2 BASIC21.13■□□□□ 0.97
UPK1AO00322 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
UPK1AO00322 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms