Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
TRIM49D1C9J1S8 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
TRIM49D1C9J1S8 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC22.36■■□□□ 1.17
TRIM49D1C9J1S8 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
TRIM49D1C9J1S8 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
TRIM49D1C9J1S8 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
TRIM49D1C9J1S8 KRT18P24-201ENST00000344739 1156 ntBASIC22.35■■□□□ 1.17
TRIM49D1C9J1S8 THA1P-201ENST00000590384 1145 ntBASIC22.35■■□□□ 1.17
TRIM49D1C9J1S8 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC22.35■■□□□ 1.17
TRIM49D1C9J1S8 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
TRIM49D1C9J1S8 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
TRIM49D1C9J1S8 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC22.34■■□□□ 1.17
TRIM49D1C9J1S8 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC22.34■■□□□ 1.17
TRIM49D1C9J1S8 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC22.34■■□□□ 1.17
TRIM49D1C9J1S8 BHLHE23-202ENST00000612929 1109 ntBASIC22.34■■□□□ 1.17
TRIM49D1C9J1S8 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC22.34■■□□□ 1.17
TRIM49D1C9J1S8 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC22.34■■□□□ 1.17
TRIM49D1C9J1S8 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC22.34■■□□□ 1.17
TRIM49D1C9J1S8 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
TRIM49D1C9J1S8 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC22.34■■□□□ 1.17
TRIM49D1C9J1S8 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC22.34■■□□□ 1.17
TRIM49D1C9J1S8 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
TRIM49D1C9J1S8 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC22.34■■□□□ 1.17
TRIM49D1C9J1S8 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
TRIM49D1C9J1S8 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
TRIM49D1C9J1S8 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
TRIM49D1C9J1S8 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.17
TRIM49D1C9J1S8 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
TRIM49D1C9J1S8 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC22.33■■□□□ 1.17
TRIM49D1C9J1S8 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
TRIM49D1C9J1S8 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC22.33■■□□□ 1.17
TRIM49D1C9J1S8 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC22.33■■□□□ 1.17
TRIM49D1C9J1S8 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
TRIM49D1C9J1S8 PVT1_1.1-201ENST00000615125 194 ntBASIC22.33■■□□□ 1.17
TRIM49D1C9J1S8 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC22.33■■□□□ 1.17
TRIM49D1C9J1S8 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC22.33■■□□□ 1.17
TRIM49D1C9J1S8 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
TRIM49D1C9J1S8 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC22.33■■□□□ 1.16
TRIM49D1C9J1S8 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
TRIM49D1C9J1S8 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC22.33■■□□□ 1.16
TRIM49D1C9J1S8 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
TRIM49D1C9J1S8 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC22.32■■□□□ 1.16
TRIM49D1C9J1S8 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC22.32■■□□□ 1.16
TRIM49D1C9J1S8 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
TRIM49D1C9J1S8 NTF6A-201ENST00000591175 560 ntBASIC22.32■■□□□ 1.16
TRIM49D1C9J1S8 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
TRIM49D1C9J1S8 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
TRIM49D1C9J1S8 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
TRIM49D1C9J1S8 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC22.31■■□□□ 1.16
TRIM49D1C9J1S8 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC22.31■■□□□ 1.16
TRIM49D1C9J1S8 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC22.31■■□□□ 1.16
TRIM49D1C9J1S8 ABHD17AP5-201ENST00000580133 923 ntBASIC22.31■■□□□ 1.16
TRIM49D1C9J1S8 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC22.31■■□□□ 1.16
TRIM49D1C9J1S8 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
TRIM49D1C9J1S8 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
TRIM49D1C9J1S8 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
TRIM49D1C9J1S8 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
TRIM49D1C9J1S8 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC22.3■■□□□ 1.16
TRIM49D1C9J1S8 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
TRIM49D1C9J1S8 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC22.3■■□□□ 1.16
TRIM49D1C9J1S8 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
TRIM49D1C9J1S8 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
TRIM49D1C9J1S8 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
TRIM49D1C9J1S8 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC22.3■■□□□ 1.16
TRIM49D1C9J1S8 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC22.3■■□□□ 1.16
TRIM49D1C9J1S8 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
TRIM49D1C9J1S8 AC139530.1-201ENST00000575312 1977 ntBASIC22.3■■□□□ 1.16
TRIM49D1C9J1S8 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
TRIM49D1C9J1S8 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
TRIM49D1C9J1S8 AC007375.3-201ENST00000600936 2314 ntBASIC22.29■■□□□ 1.16
TRIM49D1C9J1S8 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
TRIM49D1C9J1S8 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC22.29■■□□□ 1.16
TRIM49D1C9J1S8 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC22.29■■□□□ 1.16
TRIM49D1C9J1S8 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
TRIM49D1C9J1S8 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
TRIM49D1C9J1S8 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC22.29■■□□□ 1.16
TRIM49D1C9J1S8 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
TRIM49D1C9J1S8 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
TRIM49D1C9J1S8 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
TRIM49D1C9J1S8 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC22.28■■□□□ 1.16
TRIM49D1C9J1S8 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC22.28■■□□□ 1.16
TRIM49D1C9J1S8 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
TRIM49D1C9J1S8 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC22.28■■□□□ 1.16
TRIM49D1C9J1S8 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
TRIM49D1C9J1S8 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC22.28■■□□□ 1.16
TRIM49D1C9J1S8 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
TRIM49D1C9J1S8 BEX3-202ENST00000372634 753 ntTSL 2 BASIC22.28■■□□□ 1.16
TRIM49D1C9J1S8 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC22.28■■□□□ 1.16
TRIM49D1C9J1S8 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC22.28■■□□□ 1.16
TRIM49D1C9J1S8 BRD4-212ENST00000630599 726 ntTSL 2 BASIC22.28■■□□□ 1.16
TRIM49D1C9J1S8 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC22.28■■□□□ 1.16
TRIM49D1C9J1S8 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC22.27■■□□□ 1.16
TRIM49D1C9J1S8 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
TRIM49D1C9J1S8 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
TRIM49D1C9J1S8 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC22.27■■□□□ 1.16
TRIM49D1C9J1S8 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
TRIM49D1C9J1S8 AC004987.1-201ENST00000428627 508 ntBASIC22.27■■□□□ 1.16
TRIM49D1C9J1S8 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC22.27■■□□□ 1.16
TRIM49D1C9J1S8 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
TRIM49D1C9J1S8 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC22.27■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms