Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC11.17□□□□□ -0.62
LMO4P61968 DLGAP4-202ENST00000340491 2392 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
LMO4P61968 TGM1-202ENST00000544573 1581 ntTSL 2 BASIC11.17□□□□□ -0.62
LMO4P61968 AP000437.1-201ENST00000624057 2085 ntBASIC11.17□□□□□ -0.62
LMO4P61968 PTPRH-202ENST00000376350 3877 ntAPPRIS P3 TSL 1 (best) BASIC11.17□□□□□ -0.62
LMO4P61968 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
LMO4P61968 OR2T8-201ENST00000319968 939 ntAPPRIS P1 BASIC11.17□□□□□ -0.62
LMO4P61968 OR2V2-201ENST00000328275 948 ntAPPRIS P1 BASIC11.17□□□□□ -0.62
LMO4P61968 HBB-201ENST00000335295 628 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
LMO4P61968 LINC01983-201ENST00000413586 574 ntTSL 2 BASIC11.17□□□□□ -0.62
LMO4P61968 RPL18AP16-201ENST00000424057 531 ntBASIC11.17□□□□□ -0.62
LMO4P61968 CDCA4P4-201ENST00000435216 680 ntBASIC11.17□□□□□ -0.62
LMO4P61968 RPL15-208ENST00000435882 1063 ntAPPRIS P1 TSL 2 BASIC11.17□□□□□ -0.62
LMO4P61968 CMPK1-204ENST00000450808 950 ntTSL 2 BASIC11.17□□□□□ -0.62
LMO4P61968 PRR34-AS1-203ENST00000451166 877 ntTSL 3 BASIC11.17□□□□□ -0.62
LMO4P61968 HIST1H2APS2-201ENST00000454426 370 ntBASIC11.17□□□□□ -0.62
LMO4P61968 HOXB-AS3-209ENST00000477144 743 ntTSL 5 BASIC11.17□□□□□ -0.62
LMO4P61968 RNF216P1-212ENST00000493407 659 ntTSL 3 BASIC11.17□□□□□ -0.62
LMO4P61968 BCRP4-201ENST00000506079 804 ntBASIC11.17□□□□□ -0.62
LMO4P61968 AP000866.5-201ENST00000531241 445 ntTSL 5 BASIC11.17□□□□□ -0.62
LMO4P61968 AC009055.1-201ENST00000562656 781 ntTSL 3 BASIC11.17□□□□□ -0.62
LMO4P61968 LINC00514-203ENST00000573465 313 ntTSL 5 BASIC11.17□□□□□ -0.62
LMO4P61968 MIR5001-201ENST00000580185 100 ntBASIC11.17□□□□□ -0.62
LMO4P61968 AC003070.1-201ENST00000592389 457 ntTSL 2 BASIC11.17□□□□□ -0.62
LMO4P61968 LINC01082-201ENST00000601250 441 ntTSL 2 BASIC11.17□□□□□ -0.62
LMO4P61968 Metazoa_SRP.75-201ENST00000614439 293 ntBASIC11.17□□□□□ -0.62
LMO4P61968 LINC02498-201ENST00000635390 1065 ntTSL 5 BASIC11.17□□□□□ -0.62
LMO4P61968 OR2T8-202ENST00000641945 1226 ntAPPRIS P1 BASIC11.17□□□□□ -0.62
LMO4P61968 GFI1B-203ENST00000372123 1514 ntTSL 5 BASIC11.17□□□□□ -0.62
LMO4P61968 GBAP1-208ENST00000566701 1546 ntBASIC11.17□□□□□ -0.62
LMO4P61968 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC11.17□□□□□ -0.62
LMO4P61968 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
LMO4P61968 ADD1-207ENST00000446856 3745 ntTSL 5 BASIC11.17□□□□□ -0.62
LMO4P61968 STK3-218ENST00000617590 2485 ntTSL 5 BASIC11.17□□□□□ -0.62
LMO4P61968 AGPAT1-203ENST00000375107 2234 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
LMO4P61968 SLC43A3-214ENST00000529554 2207 ntAPPRIS P3 TSL 2 BASIC11.17□□□□□ -0.62
LMO4P61968 ALPL-206ENST00000539907 2241 ntTSL 2 BASIC11.17□□□□□ -0.62
LMO4P61968 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
LMO4P61968 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
LMO4P61968 NOB1-201ENST00000268802 1734 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
LMO4P61968 CETP-203ENST00000566128 1733 ntTSL 5 BASIC11.17□□□□□ -0.62
LMO4P61968 DRD2-204ENST00000538967 1493 ntAPPRIS ALT1 TSL 5 BASIC11.17□□□□□ -0.62
LMO4P61968 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC11.17□□□□□ -0.62
LMO4P61968 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC11.17□□□□□ -0.62
LMO4P61968 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
LMO4P61968 GDPD5-215ENST00000533805 2424 ntTSL 2 BASIC11.17□□□□□ -0.62
LMO4P61968 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC11.17□□□□□ -0.62
LMO4P61968 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC11.17□□□□□ -0.62
LMO4P61968 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
LMO4P61968 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC11.17□□□□□ -0.62
LMO4P61968 POPDC2-201ENST00000264231 1679 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
LMO4P61968 PHF10-206ENST00000621772 1651 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
LMO4P61968 CSNK1E-201ENST00000359867 2642 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
LMO4P61968 CCDC159-209ENST00000588790 1408 ntAPPRIS P1 TSL 5 BASIC11.17□□□□□ -0.62
LMO4P61968 CYP2B6-202ENST00000593831 1426 ntTSL 2 BASIC11.17□□□□□ -0.62
LMO4P61968 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
LMO4P61968 PXK-210ENST00000479241 2817 ntTSL 2 BASIC11.17□□□□□ -0.62
LMO4P61968 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC11.17□□□□□ -0.62
LMO4P61968 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC11.17□□□□□ -0.62
LMO4P61968 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
LMO4P61968 ZSCAN5B-202ENST00000586855 2059 ntAPPRIS P1 TSL 5 BASIC11.16□□□□□ -0.62
LMO4P61968 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
LMO4P61968 NECTIN1-203ENST00000341398 1377 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
LMO4P61968 LILRP2-202ENST00000413572 1383 ntBASIC11.16□□□□□ -0.62
LMO4P61968 HNRNPC-205ENST00000553300 1375 ntAPPRIS P2 TSL 1 (best) BASIC11.16□□□□□ -0.62
LMO4P61968 TBX6-202ENST00000395224 1803 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
LMO4P61968 WASHC1-201ENST00000442898 1827 ntAPPRIS P1 TSL 2 BASIC11.16□□□□□ -0.62
LMO4P61968 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
LMO4P61968 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
LMO4P61968 CST9-201ENST00000376971 1592 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
LMO4P61968 LMAN2L-202ENST00000377079 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
LMO4P61968 AMPD2-219ENST00000528667 3134 ntAPPRIS P2 TSL 1 (best) BASIC11.16□□□□□ -0.62
LMO4P61968 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
LMO4P61968 TTN-AS1-264ENST00000627564 1319 ntTSL 5 BASIC11.16□□□□□ -0.62
LMO4P61968 AC008038.1-201ENST00000634247 1314 ntBASIC11.16□□□□□ -0.62
LMO4P61968 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC11.16□□□□□ -0.62
LMO4P61968 PATL2-201ENST00000434130 1950 ntAPPRIS P3 TSL 5 BASIC11.16□□□□□ -0.62
LMO4P61968 F10-201ENST00000375551 1509 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
LMO4P61968 TNFSF13-203ENST00000380535 2195 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
LMO4P61968 NAALADL1-201ENST00000340252 2376 ntTSL 5 BASIC11.16□□□□□ -0.62
LMO4P61968 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
LMO4P61968 RHPN1-AS1-201ENST00000518049 1918 ntBASIC11.16□□□□□ -0.62
LMO4P61968 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
LMO4P61968 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC11.16□□□□□ -0.62
LMO4P61968 TNFSF11-201ENST00000239849 911 ntTSL 5 BASIC11.16□□□□□ -0.62
LMO4P61968 OPN1SW-201ENST00000249389 1096 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
LMO4P61968 PITHD1-202ENST00000374524 1292 ntTSL 3 BASIC11.16□□□□□ -0.62
LMO4P61968 C20orf141-201ENST00000380589 730 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
LMO4P61968 IGLJ1-201ENST00000390320 127 ntAPPRIS P1 BASIC11.16□□□□□ -0.62
LMO4P61968 SNORA50D-201ENST00000408059 134 ntBASIC11.16□□□□□ -0.62
LMO4P61968 LINC00484-201ENST00000414768 561 ntTSL 5 BASIC11.16□□□□□ -0.62
LMO4P61968 RAD51C-203ENST00000421782 567 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
LMO4P61968 KCNK15-AS1-203ENST00000427598 862 ntTSL 2 BASIC11.16□□□□□ -0.62
LMO4P61968 AL365436.2-201ENST00000434112 526 ntTSL 4 BASIC11.16□□□□□ -0.62
LMO4P61968 TONSL-AS1-201ENST00000442850 428 ntTSL 5 BASIC11.16□□□□□ -0.62
LMO4P61968 RPL29P2-201ENST00000488409 460 ntBASIC11.16□□□□□ -0.62
LMO4P61968 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC11.16□□□□□ -0.62
LMO4P61968 ANAPC15-209ENST00000538919 849 ntAPPRIS P3 TSL 3 BASIC11.16□□□□□ -0.62
LMO4P61968 RPL18-205ENST00000549273 1036 ntTSL 2 BASIC11.16□□□□□ -0.62
LMO4P61968 AC010202.1-201ENST00000551181 405 ntBASIC11.16□□□□□ -0.62
Retrieved 100 of 98,524 protein–RNA pairs in 64.4 ms