Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 GPN1-211ENST00000610189 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
FOXA1P55317 LYRM9-202ENST00000379103 1685 ntAPPRIS P1 TSL 3 BASIC13.37□□□□□ -0.27
FOXA1P55317 IL9RP3-201ENST00000442856 1674 ntBASIC13.37□□□□□ -0.27
FOXA1P55317 SLC5A11-211ENST00000569071 1919 ntTSL 5 BASIC13.37□□□□□ -0.27
FOXA1P55317 FRMPD2B-201ENST00000431305 1347 ntBASIC13.37□□□□□ -0.27
FOXA1P55317 ZFAND3-201ENST00000287218 3366 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
FOXA1P55317 CYP26B1-201ENST00000001146 4732 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
FOXA1P55317 ZFYVE27-205ENST00000370613 2669 ntTSL 2 BASIC13.36□□□□□ -0.27
FOXA1P55317 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA1P55317 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA1P55317 IL19-201ENST00000270218 1473 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA1P55317 SH2D3C-202ENST00000373276 3051 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA1P55317 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA1P55317 WLS-201ENST00000262348 2748 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA1P55317 RAB37-205ENST00000392614 2704 ntAPPRIS ALT2 TSL 2 BASIC13.36□□□□□ -0.27
FOXA1P55317 RIC8B-201ENST00000355478 3207 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA1P55317 TAGLN2-203ENST00000368097 1604 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA1P55317 SPAG8-202ENST00000396638 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA1P55317 STAT3-203ENST00000404395 2633 ntAPPRIS ALT1 TSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA1P55317 AMHR2-204ENST00000550311 1787 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA1P55317 DNAJB12-202ENST00000394903 3198 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA1P55317 B3GAT1-203ENST00000524765 5737 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
FOXA1P55317 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA1P55317 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA1P55317 OR8S1-201ENST00000310194 1080 ntBASIC13.36□□□□□ -0.27
FOXA1P55317 INO80C-202ENST00000334598 974 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA1P55317 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA1P55317 CYP46A4P-201ENST00000414953 267 ntBASIC13.36□□□□□ -0.27
FOXA1P55317 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC13.36□□□□□ -0.27
FOXA1P55317 AC073869.2-201ENST00000417338 1026 ntBASIC13.36□□□□□ -0.27
FOXA1P55317 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA1P55317 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA1P55317 TMEM14C-205ENST00000541412 1177 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
FOXA1P55317 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC13.36□□□□□ -0.27
FOXA1P55317 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
FOXA1P55317 AL645939.5-201ENST00000606834 243 ntBASIC13.36□□□□□ -0.27
FOXA1P55317 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC13.36□□□□□ -0.27
FOXA1P55317 SMIM11B-202ENST00000619874 843 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA1P55317 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC13.36□□□□□ -0.27
FOXA1P55317 OCA2-201ENST00000353809 3068 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA1P55317 LINC00943-204ENST00000537374 1688 ntTSL 5 BASIC13.36□□□□□ -0.27
FOXA1P55317 ZBED2-201ENST00000317012 2311 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
FOXA1P55317 JOSD1-201ENST00000216039 3648 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA1P55317 KCNT1-213ENST00000630792 3606 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
FOXA1P55317 AC138761.6-201ENST00000583997 1423 ntBASIC13.36□□□□□ -0.27
FOXA1P55317 GYG2-204ENST00000381163 3393 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA1P55317 WASHC2A-209ENST00000611324 4417 ntAPPRIS ALT2 TSL 2 BASIC13.36□□□□□ -0.27
FOXA1P55317 RRBP1-206ENST00000455029 2485 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA1P55317 ERG-211ENST00000453032 1595 ntTSL 2 BASIC13.36□□□□□ -0.27
FOXA1P55317 AP2M1-207ENST00000439647 1950 ntAPPRIS ALT1 TSL 2 BASIC13.36□□□□□ -0.27
FOXA1P55317 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC13.36□□□□□ -0.27
FOXA1P55317 GPR39-201ENST00000329321 2784 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA1P55317 HNRNPUL1-207ENST00000595018 2794 ntTSL 2 BASIC13.36□□□□□ -0.27
FOXA1P55317 ST5-256ENST00000534127 4545 ntAPPRIS P4 TSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA1P55317 GNB5-203ENST00000396335 2678 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA1P55317 ZNF778-202ENST00000433976 3608 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
FOXA1P55317 CCDC117-205ENST00000448492 3937 ntTSL 2 BASIC13.35□□□□□ -0.27
FOXA1P55317 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC13.35□□□□□ -0.27
FOXA1P55317 IL10-202ENST00000423557 1630 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
FOXA1P55317 MARK4-201ENST00000262891 3573 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
FOXA1P55317 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
FOXA1P55317 USP19-207ENST00000434032 4677 ntAPPRIS ALT2 TSL 2 BASIC13.35□□□□□ -0.27
FOXA1P55317 AL359915.2-202ENST00000440150 2469 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
FOXA1P55317 LINC01623-201ENST00000440244 2458 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
FOXA1P55317 CLASP2-218ENST00000487200 1940 ntTSL 2 BASIC13.35□□□□□ -0.27
FOXA1P55317 KCNH4-202ENST00000607371 3723 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
FOXA1P55317 LIMS1-205ENST00000410093 1526 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
FOXA1P55317 MINDY1-205ENST00000493834 1546 ntTSL 2 BASIC13.35□□□□□ -0.27
FOXA1P55317 RPL15-213ENST00000611050 2363 ntAPPRIS P1 TSL 4 BASIC13.35□□□□□ -0.27
FOXA1P55317 BISPR-204ENST00000634675 1806 ntTSL 2 BASIC13.35□□□□□ -0.27
FOXA1P55317 MIEF2-201ENST00000323019 3364 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
FOXA1P55317 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
FOXA1P55317 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
FOXA1P55317 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
FOXA1P55317 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
FOXA1P55317 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
FOXA1P55317 MBP-201ENST00000354542 575 ntTSL 2 BASIC13.35□□□□□ -0.27
FOXA1P55317 AC239868.1-201ENST00000369385 493 ntBASIC13.35□□□□□ -0.27
FOXA1P55317 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC13.35□□□□□ -0.27
FOXA1P55317 MIR645-201ENST00000385283 94 ntBASIC13.35□□□□□ -0.27
FOXA1P55317 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
FOXA1P55317 CRCP-204ENST00000398684 492 ntTSL 2 BASIC13.35□□□□□ -0.27
FOXA1P55317 OARD1-204ENST00000464633 717 ntTSL 2 BASIC13.35□□□□□ -0.27
FOXA1P55317 CMTM1-209ENST00000528324 749 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
FOXA1P55317 CMTM1-217ENST00000533666 493 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
FOXA1P55317 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC13.35□□□□□ -0.27
FOXA1P55317 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC13.35□□□□□ -0.27
FOXA1P55317 AC104961.2-201ENST00000578129 663 ntTSL 2 BASIC13.35□□□□□ -0.27
FOXA1P55317 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC13.35□□□□□ -0.27
FOXA1P55317 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
FOXA1P55317 PGPEP1-206ENST00000597431 545 ntTSL 5 BASIC13.35□□□□□ -0.27
FOXA1P55317 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC13.35□□□□□ -0.27
FOXA1P55317 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC13.35□□□□□ -0.27
FOXA1P55317 AL031673.1-201ENST00000611460 466 ntBASIC13.35□□□□□ -0.27
FOXA1P55317 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC13.35□□□□□ -0.27
FOXA1P55317 Metazoa_SRP.141-201ENST00000615072 282 ntBASIC13.35□□□□□ -0.27
FOXA1P55317 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
FOXA1P55317 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
FOXA1P55317 AL121956.4-201ENST00000629925 581 ntTSL 5 BASIC13.35□□□□□ -0.27
FOXA1P55317 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC13.35□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 118 ms