Protein–RNA interactions for Protein: Q86X40

LRRC28, Leucine-rich repeat-containing protein 28, humanhuman

Predicted RBP Predictions only

Length 367 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28Q86X40 RGMA-203ENST00000542321 3038 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
LRRC28Q86X40 FAM214B-208ENST00000605244 3016 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
LRRC28Q86X40 DLGAP1-203ENST00000400147 5258 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
LRRC28Q86X40 DLGAP1-206ENST00000400155 5257 ntTSL 2 BASIC12.4□□□□□ -0.42
LRRC28Q86X40 STRIP2-201ENST00000249344 5115 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
LRRC28Q86X40 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
LRRC28Q86X40 SRP54-201ENST00000216774 2279 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
LRRC28Q86X40 RBM10-201ENST00000329236 3201 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
LRRC28Q86X40 BX324167.2-201ENST00000623717 3316 ntBASIC12.4□□□□□ -0.42
LRRC28Q86X40 KLC4-203ENST00000394056 2770 ntAPPRIS ALT2 TSL 2 BASIC12.4□□□□□ -0.42
LRRC28Q86X40 TMBIM6-217ENST00000549385 2771 ntAPPRIS P3 TSL 5 BASIC12.4□□□□□ -0.42
LRRC28Q86X40 C5orf56-206ENST00000612967 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
LRRC28Q86X40 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
LRRC28Q86X40 C1orf167-202ENST00000433342 4545 ntAPPRIS P5 TSL 5 BASIC12.4□□□□□ -0.42
LRRC28Q86X40 MADD-203ENST00000349238 5873 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
LRRC28Q86X40 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
LRRC28Q86X40 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
LRRC28Q86X40 RBM38-204ENST00000371219 760 ntTSL 2 BASIC12.4□□□□□ -0.42
LRRC28Q86X40 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
LRRC28Q86X40 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC12.4□□□□□ -0.42
LRRC28Q86X40 FAM58BP-201ENST00000439056 645 ntBASIC12.4□□□□□ -0.42
LRRC28Q86X40 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
LRRC28Q86X40 KRT8P13-201ENST00000463294 1010 ntBASIC12.4□□□□□ -0.42
LRRC28Q86X40 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
LRRC28Q86X40 AC126915.1-201ENST00000522847 1038 ntBASIC12.4□□□□□ -0.42
LRRC28Q86X40 CD74-212ENST00000524315 584 ntTSL 5 BASIC12.4□□□□□ -0.42
LRRC28Q86X40 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC12.4□□□□□ -0.42
LRRC28Q86X40 AC243960.2-201ENST00000600996 747 ntBASIC12.4□□□□□ -0.42
LRRC28Q86X40 MAOA-204ENST00000542639 5438 ntTSL 2 BASIC12.4□□□□□ -0.42
LRRC28Q86X40 TRAPPC9-201ENST00000389328 4474 ntTSL 2 BASIC12.4□□□□□ -0.42
LRRC28Q86X40 SMARCA5-201ENST00000283131 7923 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
LRRC28Q86X40 SLC4A2-201ENST00000392826 3947 ntAPPRIS ALT2 TSL 2 BASIC12.4□□□□□ -0.42
LRRC28Q86X40 DPP8-201ENST00000300141 3139 ntAPPRIS ALT1 TSL 1 (best) BASIC12.4□□□□□ -0.42
LRRC28Q86X40 MAD1L1-201ENST00000265854 2718 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
LRRC28Q86X40 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC12.4□□□□□ -0.42
LRRC28Q86X40 TP53INP1-202ENST00000448464 5631 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
LRRC28Q86X40 HIC2-203ENST00000443632 6940 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
LRRC28Q86X40 GJB5-201ENST00000338513 1355 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
LRRC28Q86X40 CNKSR3-204ENST00000479339 2023 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
LRRC28Q86X40 NIPSNAP3A-201ENST00000374767 1633 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
LRRC28Q86X40 CNOT7-211ENST00000523917 1885 ntTSL 2 BASIC12.4□□□□□ -0.42
LRRC28Q86X40 AP3M2-207ENST00000518421 3669 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
LRRC28Q86X40 HDAC7-209ENST00000427332 3016 ntAPPRIS ALT2 TSL 5 BASIC12.4□□□□□ -0.43
LRRC28Q86X40 TMEM229B-207ENST00000557006 3941 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.43
LRRC28Q86X40 POTEE-201ENST00000356920 4159 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
LRRC28Q86X40 ABCA17P-202ENST00000469908 4188 ntTSL 1 (best) BASIC12.4□□□□□ -0.43
LRRC28Q86X40 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC12.4□□□□□ -0.43
LRRC28Q86X40 NCAPG-201ENST00000251496 4661 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
LRRC28Q86X40 OFD1-201ENST00000340096 3611 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
LRRC28Q86X40 CHRNA2-207ENST00000520933 2497 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
LRRC28Q86X40 PRKD1-201ENST00000331968 3726 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
LRRC28Q86X40 HNRNPDL-207ENST00000614627 3968 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
LRRC28Q86X40 GRN-222ENST00000639447 1314 ntTSL 2 BASIC12.39□□□□□ -0.43
LRRC28Q86X40 SCNN1B-202ENST00000343070 2597 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
LRRC28Q86X40 RERE-212ENST00000476556 4598 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
LRRC28Q86X40 PCDHB9-201ENST00000316105 4415 ntAPPRIS P1 BASIC12.39□□□□□ -0.43
LRRC28Q86X40 DGKZ-216ENST00000528615 2692 ntTSL 5 BASIC12.39□□□□□ -0.43
LRRC28Q86X40 NPTN-201ENST00000345330 2444 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
LRRC28Q86X40 LINC00638-201ENST00000555578 2518 ntBASIC12.39□□□□□ -0.43
LRRC28Q86X40 ANKRD20A1-201ENST00000562196 3379 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
LRRC28Q86X40 UROC1-201ENST00000290868 3149 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
LRRC28Q86X40 NTNG1-206ENST00000370071 3149 ntTSL 5 BASIC12.39□□□□□ -0.43
LRRC28Q86X40 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
LRRC28Q86X40 CSNK1E-201ENST00000359867 2642 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
LRRC28Q86X40 SPCS3-201ENST00000503362 4571 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
LRRC28Q86X40 ITGB2-201ENST00000302347 2955 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
LRRC28Q86X40 CCL19-201ENST00000311925 687 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
LRRC28Q86X40 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
LRRC28Q86X40 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
LRRC28Q86X40 NUDT2-202ENST00000379155 1002 ntAPPRIS P1 TSL 3 BASIC12.39□□□□□ -0.43
LRRC28Q86X40 SMS-201ENST00000379404 1174 ntTSL 3 BASIC12.39□□□□□ -0.43
LRRC28Q86X40 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
LRRC28Q86X40 GPAA1P2-201ENST00000417923 928 ntBASIC12.39□□□□□ -0.43
LRRC28Q86X40 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC12.39□□□□□ -0.43
LRRC28Q86X40 AL035414.1-201ENST00000451327 857 ntBASIC12.39□□□□□ -0.43
LRRC28Q86X40 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
LRRC28Q86X40 TUBB8P8-201ENST00000458717 1058 ntBASIC12.39□□□□□ -0.43
LRRC28Q86X40 AC021723.1-201ENST00000486306 515 ntBASIC12.39□□□□□ -0.43
LRRC28Q86X40 HNRNPH1-216ENST00000510411 2105 ntTSL 5 BASIC12.39□□□□□ -0.43
LRRC28Q86X40 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC12.39□□□□□ -0.43
LRRC28Q86X40 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC12.39□□□□□ -0.43
LRRC28Q86X40 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC12.39□□□□□ -0.43
LRRC28Q86X40 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC12.39□□□□□ -0.43
LRRC28Q86X40 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC12.39□□□□□ -0.43
LRRC28Q86X40 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC12.39□□□□□ -0.43
LRRC28Q86X40 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
LRRC28Q86X40 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC12.39□□□□□ -0.43
LRRC28Q86X40 MIR6787-201ENST00000616675 61 ntBASIC12.39□□□□□ -0.43
LRRC28Q86X40 AC027601.3-201ENST00000622907 509 ntBASIC12.39□□□□□ -0.43
LRRC28Q86X40 GPR182-203ENST00000622922 591 ntBASIC12.39□□□□□ -0.43
LRRC28Q86X40 TMOD1-201ENST00000259365 3343 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
LRRC28Q86X40 ZDHHC8-201ENST00000320602 3072 ntTSL 5 BASIC12.39□□□□□ -0.43
LRRC28Q86X40 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
LRRC28Q86X40 TRPC7-201ENST00000352189 2241 ntTSL 5 BASIC12.39□□□□□ -0.43
LRRC28Q86X40 FAM90A11P-201ENST00000518378 2218 ntBASIC12.39□□□□□ -0.43
LRRC28Q86X40 TBR1-201ENST00000389554 4009 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
LRRC28Q86X40 MAP4-204ENST00000395734 5590 ntAPPRIS ALT2 TSL 2 BASIC12.39□□□□□ -0.43
LRRC28Q86X40 KRT8P29-201ENST00000420409 1371 ntBASIC12.39□□□□□ -0.43
LRRC28Q86X40 BDH1-203ENST00000392379 3546 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
LRRC28Q86X40 NHLH2-202ENST00000369506 7226 ntAPPRIS P1 BASIC12.39□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms