Protein–RNA interactions for Protein: P49759

CLK1, Dual specificity protein kinase CLK1, humanhuman

Known RBP Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1P49759 KRT8P29-201ENST00000420409 1371 ntBASIC13.15□□□□□ -0.3
CLK1P49759 LIMK1-208ENST00000538333 2170 ntTSL 2 BASIC13.15□□□□□ -0.3
CLK1P49759 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC13.15□□□□□ -0.3
CLK1P49759 F2-205ENST00000530231 1849 ntTSL 5 BASIC13.15□□□□□ -0.3
CLK1P49759 SPG11-203ENST00000535302 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
CLK1P49759 FAM122B-201ENST00000298090 2706 ntAPPRIS ALT2 TSL 2 BASIC13.15□□□□□ -0.3
CLK1P49759 CCDC92-208ENST00000545135 4883 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
CLK1P49759 ZNF568-206ENST00000455427 2378 ntTSL 2 BASIC13.15□□□□□ -0.3
CLK1P49759 TVP23C-CDRT4-203ENST00000522212 2833 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
CLK1P49759 AL358933.1-201ENST00000565046 2830 ntBASIC13.15□□□□□ -0.3
CLK1P49759 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC13.15□□□□□ -0.31
CLK1P49759 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
CLK1P49759 DUOXA1-205ENST00000558422 1678 ntTSL 1 (best) BASIC13.15□□□□□ -0.31
CLK1P49759 TBL1X-203ENST00000407597 5596 ntTSL 2 BASIC13.15□□□□□ -0.31
CLK1P49759 SRGAP3-202ENST00000383836 8656 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
CLK1P49759 PIK3CD-202ENST00000377346 5203 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
CLK1P49759 NUMA1-205ENST00000393695 7343 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.31
CLK1P49759 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC13.15□□□□□ -0.31
CLK1P49759 FAM157A-203ENST00000634862 6083 ntTSL 5 BASIC13.14□□□□□ -0.31
CLK1P49759 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CLK1P49759 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CLK1P49759 AL008718.2-201ENST00000609206 1313 ntBASIC13.14□□□□□ -0.31
CLK1P49759 GRHL1-202ENST00000405379 1881 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CLK1P49759 PAPLN-203ENST00000554301 4090 ntAPPRIS ALT2 TSL 2 BASIC13.14□□□□□ -0.31
CLK1P49759 CCDC14-220ENST00000488653 4156 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLK1P49759 MED6-201ENST00000256379 1995 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLK1P49759 PDE9A-202ENST00000328862 1956 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CLK1P49759 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CLK1P49759 DCAF6-201ENST00000312263 3186 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLK1P49759 AL022323.5-201ENST00000624101 2059 ntBASIC13.14□□□□□ -0.31
CLK1P49759 NFATC2-207ENST00000610033 2740 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLK1P49759 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC13.14□□□□□ -0.31
CLK1P49759 ADARB1-214ENST00000629643 4583 ntTSL 5 BASIC13.14□□□□□ -0.31
CLK1P49759 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLK1P49759 PRR26-202ENST00000441152 2251 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
CLK1P49759 USF1-202ENST00000368020 1717 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLK1P49759 CDC20B-203ENST00000381375 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLK1P49759 LINC00538-201ENST00000626109 1906 ntBASIC13.14□□□□□ -0.31
CLK1P49759 SLC5A4-201ENST00000266086 2030 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLK1P49759 VAX1-201ENST00000277905 4494 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CLK1P49759 CCT6P3-201ENST00000419314 3702 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CLK1P49759 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLK1P49759 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLK1P49759 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLK1P49759 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
CLK1P49759 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLK1P49759 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLK1P49759 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
CLK1P49759 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC13.14□□□□□ -0.31
CLK1P49759 GOLGA2P4-201ENST00000441462 777 ntBASIC13.14□□□□□ -0.31
CLK1P49759 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC13.14□□□□□ -0.31
CLK1P49759 RPL13AP20-201ENST00000459725 609 ntBASIC13.14□□□□□ -0.31
CLK1P49759 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC13.14□□□□□ -0.31
CLK1P49759 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC13.14□□□□□ -0.31
CLK1P49759 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC13.14□□□□□ -0.31
CLK1P49759 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLK1P49759 DRG2-220ENST00000583355 891 ntTSL 3 BASIC13.14□□□□□ -0.31
CLK1P49759 AC005324.6-201ENST00000587972 613 ntBASIC13.14□□□□□ -0.31
CLK1P49759 KLK3-211ENST00000597483 810 ntTSL 2 BASIC13.14□□□□□ -0.31
CLK1P49759 AC009542.2-202ENST00000619004 1067 ntBASIC13.14□□□□□ -0.31
CLK1P49759 Z98259.2-201ENST00000641583 609 ntBASIC13.14□□□□□ -0.31
CLK1P49759 NEXN-201ENST00000330010 3195 ntTSL 2 BASIC13.14□□□□□ -0.31
CLK1P49759 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC13.14□□□□□ -0.31
CLK1P49759 THEMIS2-201ENST00000328928 2337 ntTSL 2 BASIC13.14□□□□□ -0.31
CLK1P49759 DNM3-201ENST00000355305 3280 ntTSL 5 BASIC13.14□□□□□ -0.31
CLK1P49759 MIEF2-201ENST00000323019 3364 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
CLK1P49759 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLK1P49759 CXCL5-201ENST00000296027 2538 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLK1P49759 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLK1P49759 LSINCT5-201ENST00000626215 2647 ntBASIC13.14□□□□□ -0.31
CLK1P49759 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLK1P49759 LPO-203ENST00000421678 2729 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLK1P49759 SDC3-201ENST00000336798 6392 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CLK1P49759 CCDC13-201ENST00000310232 2943 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLK1P49759 RBM19-201ENST00000261741 4194 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLK1P49759 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
CLK1P49759 TMOD1-201ENST00000259365 3343 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLK1P49759 FLT4-212ENST00000619105 3806 ntTSL 5 BASIC13.14□□□□□ -0.31
CLK1P49759 TRIM35-201ENST00000305364 4229 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLK1P49759 WDR6-201ENST00000395474 4401 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CLK1P49759 KLHL32-206ENST00000544166 2864 ntTSL 2 BASIC13.14□□□□□ -0.31
CLK1P49759 ELN-234ENST00000621115 3452 ntAPPRIS ALT2 TSL 2 BASIC13.14□□□□□ -0.31
CLK1P49759 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC13.13□□□□□ -0.31
CLK1P49759 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CLK1P49759 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC13.13□□□□□ -0.31
CLK1P49759 KRT33B-201ENST00000251646 1607 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CLK1P49759 AC144450.1-201ENST00000366424 1641 ntTSL 2 BASIC13.13□□□□□ -0.31
CLK1P49759 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CLK1P49759 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
CLK1P49759 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
CLK1P49759 C5AR1-201ENST00000355085 2311 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CLK1P49759 CYP4F11-204ENST00000591841 2531 ntTSL 2 BASIC13.13□□□□□ -0.31
CLK1P49759 AC244197.3-201ENST00000422081 2635 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
CLK1P49759 LHCGR-201ENST00000294954 3044 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
CLK1P49759 NTNG1-206ENST00000370071 3149 ntTSL 5 BASIC13.13□□□□□ -0.31
CLK1P49759 NTRK2-203ENST00000323115 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CLK1P49759 SMIM12-206ENST00000521580 3454 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CLK1P49759 MTSS1-201ENST00000325064 2777 ntTSL 2 BASIC13.13□□□□□ -0.31
CLK1P49759 HSD17B4-201ENST00000256216 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CLK1P49759 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms