Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 UNC13B-207ENST00000619578 6426 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
SDCBPO00560 SLC38A7-201ENST00000219320 4392 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
SDCBPO00560 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC11.87□□□□□ -0.51
SDCBPO00560 FAM53B-203ENST00000392754 3557 ntAPPRIS P1 TSL 2 BASIC11.87□□□□□ -0.51
SDCBPO00560 EPHB6-211ENST00000619012 4011 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
SDCBPO00560 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
SDCBPO00560 Z98257.2-202ENST00000641138 1548 ntBASIC11.87□□□□□ -0.51
SDCBPO00560 FGGY-201ENST00000303721 1976 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
SDCBPO00560 TRPC7-202ENST00000378459 2406 ntTSL 5 BASIC11.87□□□□□ -0.51
SDCBPO00560 EMBP1-203ENST00000622787 4235 ntTSL 2 BASIC11.87□□□□□ -0.51
SDCBPO00560 RNF43-208ENST00000584437 5575 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
SDCBPO00560 NOBOX-201ENST00000467773 2076 ntTSL 5 BASIC11.87□□□□□ -0.51
SDCBPO00560 CPEB1-213ENST00000617462 2068 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
SDCBPO00560 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
SDCBPO00560 ARFIP1-203ENST00000405727 1601 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
SDCBPO00560 SEZ6-202ENST00000335960 4195 ntAPPRIS ALT2 TSL 5 BASIC11.87□□□□□ -0.51
SDCBPO00560 TTC14-202ENST00000382584 2274 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
SDCBPO00560 SLFNL1-AS1-201ENST00000626479 4800 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
SDCBPO00560 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
SDCBPO00560 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
SDCBPO00560 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC11.87□□□□□ -0.51
SDCBPO00560 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
SDCBPO00560 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC11.87□□□□□ -0.51
SDCBPO00560 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
SDCBPO00560 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC11.87□□□□□ -0.51
SDCBPO00560 MTX1P1-201ENST00000440904 838 ntBASIC11.87□□□□□ -0.51
SDCBPO00560 AC022210.1-201ENST00000449856 793 ntBASIC11.87□□□□□ -0.51
SDCBPO00560 Z93015.1-201ENST00000451718 390 ntBASIC11.87□□□□□ -0.51
SDCBPO00560 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC11.87□□□□□ -0.51
SDCBPO00560 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
SDCBPO00560 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
SDCBPO00560 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC11.87□□□□□ -0.51
SDCBPO00560 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC11.87□□□□□ -0.51
SDCBPO00560 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC11.87□□□□□ -0.51
SDCBPO00560 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC11.87□□□□□ -0.51
SDCBPO00560 USB1-203ENST00000539737 1212 ntTSL 2 BASIC11.87□□□□□ -0.51
SDCBPO00560 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC11.87□□□□□ -0.51
SDCBPO00560 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC11.87□□□□□ -0.51
SDCBPO00560 MIR4783-201ENST00000580343 82 ntBASIC11.87□□□□□ -0.51
SDCBPO00560 MIR6805-201ENST00000615055 62 ntBASIC11.87□□□□□ -0.51
SDCBPO00560 AC133540.1-201ENST00000620845 1019 ntBASIC11.87□□□□□ -0.51
SDCBPO00560 AL591471.1-201ENST00000621855 229 ntBASIC11.87□□□□□ -0.51
SDCBPO00560 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
SDCBPO00560 COX11-210ENST00000639671 696 ntBASIC11.87□□□□□ -0.51
SDCBPO00560 ACSL4-202ENST00000348502 5032 ntAPPRIS ALT1 TSL 1 (best) BASIC11.87□□□□□ -0.51
SDCBPO00560 AC011481.3-201ENST00000623895 5594 ntBASIC11.87□□□□□ -0.51
SDCBPO00560 DLGAP3-201ENST00000235180 3587 ntAPPRIS P1 TSL 2 BASIC11.87□□□□□ -0.51
SDCBPO00560 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC11.87□□□□□ -0.51
SDCBPO00560 CEP131-201ENST00000269392 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
SDCBPO00560 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC11.87□□□□□ -0.51
SDCBPO00560 AC007952.5-201ENST00000572818 1486 ntBASIC11.87□□□□□ -0.51
SDCBPO00560 ALPP-201ENST00000392027 2971 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
SDCBPO00560 PTPRK-204ENST00000368210 5025 ntAPPRIS ALT2 TSL 5 BASIC11.87□□□□□ -0.51
SDCBPO00560 SYK-204ENST00000375754 5005 ntAPPRIS P3 TSL 1 (best) BASIC11.87□□□□□ -0.51
SDCBPO00560 IKZF1-206ENST00000359197 3487 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
SDCBPO00560 MAP7-205ENST00000544465 2744 ntAPPRIS ALT2 TSL 2 BASIC11.87□□□□□ -0.51
SDCBPO00560 KCNJ11-201ENST00000339994 2801 ntAPPRIS P1 BASIC11.87□□□□□ -0.51
SDCBPO00560 STAT4-202ENST00000392320 2822 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
SDCBPO00560 PI4KAP2-201ENST00000360806 2080 ntBASIC11.87□□□□□ -0.51
SDCBPO00560 AGGF1P10-201ENST00000635005 2191 ntBASIC11.86□□□□□ -0.51
SDCBPO00560 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
SDCBPO00560 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
SDCBPO00560 PGBD1-201ENST00000259883 3100 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
SDCBPO00560 AFF1-201ENST00000307808 9390 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
SDCBPO00560 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC11.86□□□□□ -0.51
SDCBPO00560 CHD5-201ENST00000262450 9646 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
SDCBPO00560 BCL2L1-203ENST00000376062 2578 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
SDCBPO00560 AC002350.2-201ENST00000623894 1828 ntBASIC11.86□□□□□ -0.51
SDCBPO00560 PLEKHB2-202ENST00000403716 4349 ntTSL 3 BASIC11.86□□□□□ -0.51
SDCBPO00560 DCAF6-201ENST00000312263 3186 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
SDCBPO00560 AMT-221ENST00000538581 2038 ntTSL 2 BASIC11.86□□□□□ -0.51
SDCBPO00560 PARP3-201ENST00000398755 2336 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
SDCBPO00560 UBE2W-201ENST00000419880 2315 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
SDCBPO00560 GUCY1B3-204ENST00000505154 2316 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
SDCBPO00560 FAM237B-201ENST00000637645 3877 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
SDCBPO00560 DDX50-201ENST00000373585 2538 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
SDCBPO00560 FNTB-201ENST00000246166 2834 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
SDCBPO00560 PER1-202ENST00000354903 3115 ntTSL 2 BASIC11.86□□□□□ -0.51
SDCBPO00560 KCNH4-202ENST00000607371 3723 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
SDCBPO00560 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
SDCBPO00560 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC11.86□□□□□ -0.51
SDCBPO00560 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
SDCBPO00560 MIR658-201ENST00000385210 100 ntBASIC11.86□□□□□ -0.51
SDCBPO00560 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
SDCBPO00560 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC11.86□□□□□ -0.51
SDCBPO00560 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
SDCBPO00560 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC11.86□□□□□ -0.51
SDCBPO00560 AC006122.1-201ENST00000493323 440 ntBASIC11.86□□□□□ -0.51
SDCBPO00560 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC11.86□□□□□ -0.51
SDCBPO00560 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC11.86□□□□□ -0.51
SDCBPO00560 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC11.86□□□□□ -0.51
SDCBPO00560 AC140658.4-201ENST00000561990 352 ntBASIC11.86□□□□□ -0.51
SDCBPO00560 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC11.86□□□□□ -0.51
SDCBPO00560 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
SDCBPO00560 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
SDCBPO00560 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC11.86□□□□□ -0.51
SDCBPO00560 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC11.86□□□□□ -0.51
SDCBPO00560 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC11.86□□□□□ -0.51
SDCBPO00560 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC11.86□□□□□ -0.51
SDCBPO00560 AC009542.2-202ENST00000619004 1067 ntBASIC11.86□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 54.3 ms