Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 CICP14-201ENST00000629111 2732 ntBASIC15.03■□□□□ -0
LRCH3Q96II8 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC15.03■□□□□ -0
LRCH3Q96II8 AC139712.1-201ENST00000378256 1875 ntBASIC15.03■□□□□ -0
LRCH3Q96II8 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC15.03■□□□□ -0
LRCH3Q96II8 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC15.03■□□□□ -0
LRCH3Q96II8 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
LRCH3Q96II8 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC15.03■□□□□ -0
LRCH3Q96II8 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
LRCH3Q96II8 CACNA1A-211ENST00000592864 1623 ntTSL 3 BASIC15.03■□□□□ -0
LRCH3Q96II8 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC15.02■□□□□ -0
LRCH3Q96II8 FAM189A2-202ENST00000303068 2051 ntTSL 2 BASIC15.02■□□□□ -0
LRCH3Q96II8 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
LRCH3Q96II8 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC15.02■□□□□ -0
LRCH3Q96II8 LYRM4-205ENST00000464010 1401 ntTSL 3 BASIC15.02■□□□□ -0
LRCH3Q96II8 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC15.02■□□□□ -0
LRCH3Q96II8 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC15.02■□□□□ -0
LRCH3Q96II8 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
LRCH3Q96II8 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC15.02■□□□□ -0
LRCH3Q96II8 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC15.02■□□□□ -0
LRCH3Q96II8 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC15.02■□□□□ -0
LRCH3Q96II8 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC15.02■□□□□ -0
LRCH3Q96II8 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
LRCH3Q96II8 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
LRCH3Q96II8 USP35-204ENST00000530267 2419 ntTSL 2 BASIC15.02■□□□□ -0
LRCH3Q96II8 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
LRCH3Q96II8 AC124944.3-201ENST00000607976 1304 ntBASIC15.02■□□□□ -0
LRCH3Q96II8 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC15.02■□□□□ -0
LRCH3Q96II8 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC15.02■□□□□ -0
LRCH3Q96II8 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
LRCH3Q96II8 HAX1-201ENST00000328703 1227 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
LRCH3Q96II8 KDM5C-IT1-201ENST00000412242 755 ntTSL 5 BASIC15.02■□□□□ -0
LRCH3Q96II8 AL359182.1-201ENST00000435915 469 ntTSL 3 BASIC15.02■□□□□ -0
LRCH3Q96II8 LINC01378-202ENST00000437514 783 ntTSL 3 BASIC15.02■□□□□ -0
LRCH3Q96II8 AL133351.2-201ENST00000437718 484 ntTSL 2 BASIC15.02■□□□□ -0
LRCH3Q96II8 SDR42E1P3-201ENST00000438345 502 ntBASIC15.02■□□□□ -0
LRCH3Q96II8 AC008080.4-202ENST00000440034 1005 ntTSL 3 BASIC15.02■□□□□ -0
LRCH3Q96II8 LINC01833-204ENST00000444871 581 ntTSL 3 BASIC15.02■□□□□ -0
LRCH3Q96II8 VDAC1P11-201ENST00000458323 852 ntBASIC15.02■□□□□ -0
LRCH3Q96II8 RPL12P24-201ENST00000474907 486 ntBASIC15.02■□□□□ -0
LRCH3Q96II8 GIMAP6-202ENST00000493969 876 ntTSL 2 BASIC15.02■□□□□ -0
LRCH3Q96II8 RNA5SP288-201ENST00000516075 93 ntBASIC15.02■□□□□ -0
LRCH3Q96II8 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC15.02■□□□□ -0
LRCH3Q96II8 HNRNPC-221ENST00000555883 1182 ntTSL 1 (best) BASIC15.02■□□□□ -0
LRCH3Q96II8 AL157871.2-201ENST00000556212 552 ntTSL 3 BASIC15.02■□□□□ -0
LRCH3Q96II8 FAM223B-202ENST00000598177 713 ntBASIC15.02■□□□□ -0
LRCH3Q96II8 RPS5-205ENST00000598495 800 ntTSL 3 BASIC15.02■□□□□ -0
LRCH3Q96II8 Metazoa_SRP.63-201ENST00000617144 298 ntBASIC15.02■□□□□ -0
LRCH3Q96II8 FAM223A-202ENST00000625204 713 ntBASIC15.02■□□□□ -0
LRCH3Q96II8 LUC7L3-223ENST00000625349 408 ntTSL 2 BASIC15.02■□□□□ -0
LRCH3Q96II8 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
LRCH3Q96II8 API5-203ENST00000455725 2257 ntTSL 2 BASIC15.02□□□□□ -0.01
LRCH3Q96II8 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
LRCH3Q96II8 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
LRCH3Q96II8 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
LRCH3Q96II8 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
LRCH3Q96II8 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
LRCH3Q96II8 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
LRCH3Q96II8 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC15.02□□□□□ -0.01
LRCH3Q96II8 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
LRCH3Q96II8 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC15.02□□□□□ -0.01
LRCH3Q96II8 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
LRCH3Q96II8 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
LRCH3Q96II8 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC15.02□□□□□ -0.01
LRCH3Q96II8 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC15.02□□□□□ -0.01
LRCH3Q96II8 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC15.02□□□□□ -0.01
LRCH3Q96II8 AP000845.1-201ENST00000581677 2131 ntBASIC15.02□□□□□ -0.01
LRCH3Q96II8 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC15.02□□□□□ -0.01
LRCH3Q96II8 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
LRCH3Q96II8 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02□□□□□ -0.01
LRCH3Q96II8 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
LRCH3Q96II8 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC15.02□□□□□ -0.01
LRCH3Q96II8 COMMD10-201ENST00000274458 1469 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LRCH3Q96II8 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
LRCH3Q96II8 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC15.01□□□□□ -0.01
LRCH3Q96II8 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LRCH3Q96II8 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
LRCH3Q96II8 SHISA5-206ENST00000426002 1839 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LRCH3Q96II8 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
LRCH3Q96II8 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LRCH3Q96II8 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LRCH3Q96II8 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC15.01□□□□□ -0.01
LRCH3Q96II8 INCA1-201ENST00000355025 1383 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
LRCH3Q96II8 ECI2-201ENST00000361538 1380 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
LRCH3Q96II8 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LRCH3Q96II8 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC15.01□□□□□ -0.01
LRCH3Q96II8 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LRCH3Q96II8 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LRCH3Q96II8 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LRCH3Q96II8 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC15.01□□□□□ -0.01
LRCH3Q96II8 MARCH9-202ENST00000548358 1668 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
LRCH3Q96II8 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
LRCH3Q96II8 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
LRCH3Q96II8 GZMB-201ENST00000216341 968 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LRCH3Q96II8 KRTAP1-5-201ENST00000361883 1177 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
LRCH3Q96II8 G0S2-201ENST00000367029 866 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LRCH3Q96II8 AC074019.1-201ENST00000428788 1096 ntBASIC15.01□□□□□ -0.01
LRCH3Q96II8 AL359644.1-204ENST00000440807 440 ntTSL 3 BASIC15.01□□□□□ -0.01
LRCH3Q96II8 TONSL-AS1-201ENST00000442850 428 ntTSL 5 BASIC15.01□□□□□ -0.01
LRCH3Q96II8 Z69733.1-201ENST00000445990 632 ntTSL 3 BASIC15.01□□□□□ -0.01
LRCH3Q96II8 OR52X1P-201ENST00000446117 914 ntBASIC15.01□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms