Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 SLC5A11-203ENST00000449109 2069 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SHANK3Q9BYB0 CPPED1-203ENST00000433677 1993 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SHANK3Q9BYB0 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC17.23■□□□□ 0.35
SHANK3Q9BYB0 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
SHANK3Q9BYB0 POLDIP3-209ENST00000617178 2006 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SHANK3Q9BYB0 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SHANK3Q9BYB0 SERPINH1-205ENST00000525876 2283 ntTSL 2 BASIC17.23■□□□□ 0.35
SHANK3Q9BYB0 DDX43-201ENST00000370336 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SHANK3Q9BYB0 TP73-207ENST00000378290 1831 ntTSL 2 BASIC17.23■□□□□ 0.35
SHANK3Q9BYB0 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SHANK3Q9BYB0 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC17.23■□□□□ 0.35
SHANK3Q9BYB0 AL359845.1-201ENST00000458202 1648 ntBASIC17.23■□□□□ 0.35
SHANK3Q9BYB0 ADPGK-202ENST00000456471 808 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SHANK3Q9BYB0 VEGFA-210ENST00000457104 414 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SHANK3Q9BYB0 AC009312.1-201ENST00000457110 592 ntTSL 4 BASIC17.23■□□□□ 0.35
SHANK3Q9BYB0 VEGFA-218ENST00000518689 630 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SHANK3Q9BYB0 VEGFA-223ENST00000523125 541 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
SHANK3Q9BYB0 AC080023.2-201ENST00000532615 208 ntBASIC17.23■□□□□ 0.35
SHANK3Q9BYB0 AL391832.3-201ENST00000549744 846 ntTSL 3 BASIC17.23■□□□□ 0.35
SHANK3Q9BYB0 AC009119.3-202ENST00000566773 196 ntTSL 3 BASIC17.23■□□□□ 0.35
SHANK3Q9BYB0 BCAS4-206ENST00000609336 787 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
SHANK3Q9BYB0 PAX8-AS1-219ENST00000623306 840 ntTSL 5 BASIC17.23■□□□□ 0.35
SHANK3Q9BYB0 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
SHANK3Q9BYB0 ZDHHC8P1-202ENST00000418264 1403 ntBASIC17.23■□□□□ 0.35
SHANK3Q9BYB0 SLCO2A1-208ENST00000493729 1918 ntTSL 5 BASIC17.23■□□□□ 0.35
SHANK3Q9BYB0 GOSR2-235ENST00000640269 2190 ntTSL 5 BASIC17.23■□□□□ 0.35
SHANK3Q9BYB0 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
SHANK3Q9BYB0 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SHANK3Q9BYB0 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC17.23■□□□□ 0.35
SHANK3Q9BYB0 TMEM87A-201ENST00000307216 1598 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SHANK3Q9BYB0 IDH3A-207ENST00000558554 1595 ntTSL 2 BASIC17.23■□□□□ 0.35
SHANK3Q9BYB0 GMPR2-224ENST00000559910 1562 ntTSL 5 BASIC17.23■□□□□ 0.35
SHANK3Q9BYB0 KIF6-201ENST00000229913 1330 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SHANK3Q9BYB0 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SHANK3Q9BYB0 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SHANK3Q9BYB0 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC17.22■□□□□ 0.35
SHANK3Q9BYB0 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SHANK3Q9BYB0 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SHANK3Q9BYB0 OLAH-203ENST00000378228 1675 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SHANK3Q9BYB0 RNASE8-201ENST00000308227 634 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
SHANK3Q9BYB0 GSTK1-201ENST00000358406 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SHANK3Q9BYB0 AL391647.1-201ENST00000395664 511 ntBASIC17.22■□□□□ 0.35
SHANK3Q9BYB0 AC105446.1-201ENST00000441882 407 ntTSL 3 BASIC17.22■□□□□ 0.35
SHANK3Q9BYB0 FTLP16-201ENST00000446400 513 ntBASIC17.22■□□□□ 0.35
SHANK3Q9BYB0 HNRNPA1P9-201ENST00000450624 950 ntBASIC17.22■□□□□ 0.35
SHANK3Q9BYB0 PDCD2-205ENST00000537445 1114 ntTSL 3 BASIC17.22■□□□□ 0.35
SHANK3Q9BYB0 ALG10-202ENST00000538927 571 ntTSL 5 BASIC17.22■□□□□ 0.35
SHANK3Q9BYB0 GABARAPL2-203ENST00000565057 571 ntTSL 2 BASIC17.22■□□□□ 0.35
SHANK3Q9BYB0 CYP4F10P-201ENST00000589560 752 ntBASIC17.22■□□□□ 0.35
SHANK3Q9BYB0 AC148476.1-201ENST00000622182 705 ntBASIC17.22■□□□□ 0.35
SHANK3Q9BYB0 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
SHANK3Q9BYB0 KIR2DL4-204ENST00000359085 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
SHANK3Q9BYB0 RBM25-204ENST00000526754 1567 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SHANK3Q9BYB0 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC17.22■□□□□ 0.35
SHANK3Q9BYB0 SEM1-201ENST00000248566 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SHANK3Q9BYB0 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
SHANK3Q9BYB0 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
SHANK3Q9BYB0 AL590399.1-202ENST00000429818 1480 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SHANK3Q9BYB0 AL512625.1-202ENST00000476224 1480 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SHANK3Q9BYB0 NUP62CL-201ENST00000372466 1755 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SHANK3Q9BYB0 PRR3-201ENST00000376557 1797 ntTSL 2 BASIC17.22■□□□□ 0.35
SHANK3Q9BYB0 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SHANK3Q9BYB0 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
SHANK3Q9BYB0 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
SHANK3Q9BYB0 OPRM1-210ENST00000452687 1352 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SHANK3Q9BYB0 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SHANK3Q9BYB0 MKL1-204ENST00000402630 747 ntTSL 2 BASIC17.21■□□□□ 0.35
SHANK3Q9BYB0 DIS3L2-205ENST00000409401 2048 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SHANK3Q9BYB0 AC131235.2-201ENST00000445553 1057 ntBASIC17.21■□□□□ 0.35
SHANK3Q9BYB0 AC069421.1-201ENST00000447462 323 ntBASIC17.21■□□□□ 0.35
SHANK3Q9BYB0 TAC3-209ENST00000458521 816 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SHANK3Q9BYB0 CAP2-207ENST00000493172 861 ntTSL 2 BASIC17.21■□□□□ 0.35
SHANK3Q9BYB0 AC107959.3-201ENST00000520840 484 ntTSL 5 BASIC17.21■□□□□ 0.35
SHANK3Q9BYB0 FAM213AP2-201ENST00000521579 683 ntBASIC17.21■□□□□ 0.35
SHANK3Q9BYB0 AC073610.2-201ENST00000537495 406 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
SHANK3Q9BYB0 IFI27L1-209ENST00000555523 680 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
SHANK3Q9BYB0 NOSIP-204ENST00000596358 1005 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
SHANK3Q9BYB0 ZNF677-207ENST00000598806 701 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SHANK3Q9BYB0 SMARCA2-254ENST00000636903 2471 ntTSL 5 BASIC17.21■□□□□ 0.35
SHANK3Q9BYB0 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC17.21■□□□□ 0.35
SHANK3Q9BYB0 DEGS1-202ENST00000391877 1345 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
SHANK3Q9BYB0 UBTF-209ENST00000529383 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SHANK3Q9BYB0 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SHANK3Q9BYB0 HELLS-202ENST00000348459 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SHANK3Q9BYB0 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC17.21■□□□□ 0.35
SHANK3Q9BYB0 AL512488.1-201ENST00000433544 1671 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SHANK3Q9BYB0 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC17.21■□□□□ 0.35
SHANK3Q9BYB0 RIOK1-202ENST00000379834 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SHANK3Q9BYB0 MAP3K3-203ENST00000577395 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SHANK3Q9BYB0 SEPT4-223ENST00000583114 1709 ntTSL 2 BASIC17.21■□□□□ 0.35
SHANK3Q9BYB0 AC244154.1-201ENST00000620148 1555 ntBASIC17.21■□□□□ 0.35
SHANK3Q9BYB0 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
SHANK3Q9BYB0 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SHANK3Q9BYB0 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SHANK3Q9BYB0 AL591368.1-201ENST00000437181 1449 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SHANK3Q9BYB0 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
SHANK3Q9BYB0 FAM76A-202ENST00000234549 992 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SHANK3Q9BYB0 GZMH-202ENST00000382548 687 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SHANK3Q9BYB0 SERF2-205ENST00000403425 690 ntTSL 2 BASIC17.21■□□□□ 0.35
SHANK3Q9BYB0 RN7SL2-201ENST00000490232 300 ntBASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms