Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC11.95□□□□□ -0.5
SDCBPO00560 YBX1P6-201ENST00000442962 1002 ntBASIC11.95□□□□□ -0.5
SDCBPO00560 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC11.95□□□□□ -0.5
SDCBPO00560 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC11.95□□□□□ -0.5
SDCBPO00560 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC11.95□□□□□ -0.5
SDCBPO00560 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC11.95□□□□□ -0.5
SDCBPO00560 FXYD6-202ENST00000524656 1033 ntAPPRIS P2 TSL 3 BASIC11.95□□□□□ -0.5
SDCBPO00560 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC11.95□□□□□ -0.5
SDCBPO00560 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC11.95□□□□□ -0.5
SDCBPO00560 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC11.95□□□□□ -0.5
SDCBPO00560 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC11.95□□□□□ -0.5
SDCBPO00560 AC100827.2-201ENST00000563214 1194 ntBASIC11.95□□□□□ -0.5
SDCBPO00560 MIR4741-201ENST00000579822 90 ntBASIC11.95□□□□□ -0.5
SDCBPO00560 DRG2-220ENST00000583355 891 ntTSL 3 BASIC11.95□□□□□ -0.5
SDCBPO00560 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC11.95□□□□□ -0.5
SDCBPO00560 AC244157.2-201ENST00000616239 1006 ntBASIC11.95□□□□□ -0.5
SDCBPO00560 AL035252.4-201ENST00000624174 288 ntBASIC11.95□□□□□ -0.5
SDCBPO00560 VENTXP1-201ENST00000569334 2716 ntBASIC11.95□□□□□ -0.5
SDCBPO00560 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC11.95□□□□□ -0.5
SDCBPO00560 TRAPPC9-201ENST00000389328 4474 ntTSL 2 BASIC11.95□□□□□ -0.5
SDCBPO00560 PIK3AP1-201ENST00000339364 4803 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
SDCBPO00560 ELOVL4-201ENST00000369816 3042 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
SDCBPO00560 SDF2-201ENST00000247020 1568 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
SDCBPO00560 HTR5A-201ENST00000287907 2912 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
SDCBPO00560 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC11.95□□□□□ -0.5
SDCBPO00560 CCDC18-203ENST00000401026 4552 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
SDCBPO00560 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
SDCBPO00560 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC11.95□□□□□ -0.5
SDCBPO00560 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC11.95□□□□□ -0.5
SDCBPO00560 TMBIM7P-202ENST00000641474 1516 ntBASIC11.95□□□□□ -0.5
SDCBPO00560 DCAF5-209ENST00000557386 2883 ntAPPRIS ALT1 TSL 1 (best) BASIC11.95□□□□□ -0.5
SDCBPO00560 NPNT-211ENST00000506666 2187 ntTSL 2 BASIC11.95□□□□□ -0.5
SDCBPO00560 GPR107-208ENST00000610997 2813 ntTSL 5 BASIC11.95□□□□□ -0.5
SDCBPO00560 CACNA1G-229ENST00000514181 6795 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
SDCBPO00560 C16orf62-215ENST00000542263 3138 ntTSL 2 BASIC11.95□□□□□ -0.5
SDCBPO00560 ITGA5-201ENST00000293379 4444 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
SDCBPO00560 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
SDCBPO00560 NPTN-201ENST00000345330 2444 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.5
SDCBPO00560 GDAP2-201ENST00000369442 2436 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
SDCBPO00560 SLC7A8-205ENST00000453702 1752 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
SDCBPO00560 MNT-201ENST00000174618 4996 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
SDCBPO00560 ARHGEF33-201ENST00000398800 4300 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
SDCBPO00560 PIK3R6-204ENST00000619866 3041 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
SDCBPO00560 AC108024.1-201ENST00000626286 1721 ntBASIC11.94□□□□□ -0.5
SDCBPO00560 GMPR2-206ENST00000557854 2025 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
SDCBPO00560 PER3-208ENST00000613533 6318 ntAPPRIS ALT2 TSL 5 BASIC11.94□□□□□ -0.5
SDCBPO00560 DCDC2-202ENST00000378454 4707 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
SDCBPO00560 AC244394.1-201ENST00000435000 1665 ntBASIC11.94□□□□□ -0.5
SDCBPO00560 IFT172-203ENST00000416524 1982 ntTSL 2 BASIC11.94□□□□□ -0.5
SDCBPO00560 CDK2-201ENST00000266970 2296 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
SDCBPO00560 DTX1-201ENST00000257600 3455 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
SDCBPO00560 PIGG-217ENST00000509768 3121 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
SDCBPO00560 ANKRD36B-204ENST00000438709 6067 ntTSL 5 BASIC11.94□□□□□ -0.5
SDCBPO00560 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC11.94□□□□□ -0.5
SDCBPO00560 AC022497.1-201ENST00000624916 3691 ntBASIC11.94□□□□□ -0.5
SDCBPO00560 CDCA3-202ENST00000422785 2760 ntTSL 2 BASIC11.94□□□□□ -0.5
SDCBPO00560 LINC01679-201ENST00000442815 2798 ntTSL 3 BASIC11.94□□□□□ -0.5
SDCBPO00560 C10orf88-204ENST00000481909 2482 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
SDCBPO00560 MCM2-201ENST00000265056 3622 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
SDCBPO00560 MEST-206ENST00000416162 2158 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
SDCBPO00560 AC022400.8-201ENST00000623453 3599 ntBASIC11.94□□□□□ -0.5
SDCBPO00560 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
SDCBPO00560 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC11.94□□□□□ -0.5
SDCBPO00560 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC11.94□□□□□ -0.5
SDCBPO00560 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
SDCBPO00560 TPO-206ENST00000382269 1155 ntTSL 5 BASIC11.94□□□□□ -0.5
SDCBPO00560 MIR1909-201ENST00000411312 80 ntBASIC11.94□□□□□ -0.5
SDCBPO00560 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC11.94□□□□□ -0.5
SDCBPO00560 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC11.94□□□□□ -0.5
SDCBPO00560 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
SDCBPO00560 AL645933.1-201ENST00000440087 609 ntBASIC11.94□□□□□ -0.5
SDCBPO00560 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
SDCBPO00560 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC11.94□□□□□ -0.5
SDCBPO00560 GPR53P-205ENST00000457298 1084 ntBASIC11.94□□□□□ -0.5
SDCBPO00560 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC11.94□□□□□ -0.5
SDCBPO00560 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
SDCBPO00560 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC11.94□□□□□ -0.5
SDCBPO00560 AC104758.3-203ENST00000562938 2123 ntBASIC11.94□□□□□ -0.5
SDCBPO00560 AC009884.2-201ENST00000603110 324 ntBASIC11.94□□□□□ -0.5
SDCBPO00560 AC021016.3-201ENST00000608367 477 ntBASIC11.94□□□□□ -0.5
SDCBPO00560 RIC8B-201ENST00000355478 3207 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
SDCBPO00560 CACNA1G-222ENST00000510366 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
SDCBPO00560 CACNA1G-227ENST00000513964 6735 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
SDCBPO00560 POLD1-205ENST00000595904 3402 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
SDCBPO00560 GBF1-201ENST00000369983 6403 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
SDCBPO00560 ELN-211ENST00000414324 3139 ntAPPRIS ALT2 TSL 2 BASIC11.94□□□□□ -0.5
SDCBPO00560 FUT3-201ENST00000303225 2584 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
SDCBPO00560 COPS7B-203ENST00000373608 2563 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
SDCBPO00560 AC036108.2-201ENST00000566974 2562 ntTSL 2 BASIC11.94□□□□□ -0.5
SDCBPO00560 MYNN-201ENST00000349841 4999 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
SDCBPO00560 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC11.94□□□□□ -0.5
SDCBPO00560 LAP3P2-201ENST00000454686 1454 ntBASIC11.94□□□□□ -0.5
SDCBPO00560 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC11.94□□□□□ -0.5
SDCBPO00560 MSNP1-201ENST00000511640 1732 ntBASIC11.94□□□□□ -0.5
SDCBPO00560 SPTBN2-204ENST00000529997 8085 ntTSL 5 BASIC11.94□□□□□ -0.5
SDCBPO00560 HTR3A-201ENST00000299961 1994 ntTSL 2 BASIC11.94□□□□□ -0.5
SDCBPO00560 ABLIM2-215ENST00000545242 1972 ntAPPRIS ALT2 TSL 5 BASIC11.94□□□□□ -0.5
SDCBPO00560 WNT5A-201ENST00000264634 6176 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
SDCBPO00560 PGM1-202ENST00000371084 2472 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
SDCBPO00560 LINC00987-201ENST00000427111 2472 ntTSL 2 BASIC11.94□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms