Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
PCDHGA1Q9Y5H4 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PCDHGA1Q9Y5H4 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PCDHGA1Q9Y5H4 LHPP-203ENST00000392757 840 ntTSL 3 BASIC21.65■■□□□ 1.06
PCDHGA1Q9Y5H4 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
PCDHGA1Q9Y5H4 OR2I1P-207ENST00000453522 948 ntBASIC21.65■■□□□ 1.06
PCDHGA1Q9Y5H4 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC21.65■■□□□ 1.06
PCDHGA1Q9Y5H4 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
PCDHGA1Q9Y5H4 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
PCDHGA1Q9Y5H4 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PCDHGA1Q9Y5H4 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
PCDHGA1Q9Y5H4 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC21.65■■□□□ 1.06
PCDHGA1Q9Y5H4 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
PCDHGA1Q9Y5H4 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC21.64■■□□□ 1.05
PCDHGA1Q9Y5H4 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
PCDHGA1Q9Y5H4 ME3-201ENST00000323418 1068 ntTSL 5 BASIC21.64■■□□□ 1.05
PCDHGA1Q9Y5H4 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC21.64■■□□□ 1.05
PCDHGA1Q9Y5H4 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
PCDHGA1Q9Y5H4 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
PCDHGA1Q9Y5H4 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC21.64■■□□□ 1.05
PCDHGA1Q9Y5H4 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
PCDHGA1Q9Y5H4 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
PCDHGA1Q9Y5H4 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
PCDHGA1Q9Y5H4 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
PCDHGA1Q9Y5H4 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
PCDHGA1Q9Y5H4 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC21.64■■□□□ 1.05
PCDHGA1Q9Y5H4 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC21.63■■□□□ 1.05
PCDHGA1Q9Y5H4 MPST-204ENST00000404393 1329 ntTSL 5 BASIC21.63■■□□□ 1.05
PCDHGA1Q9Y5H4 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
PCDHGA1Q9Y5H4 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
PCDHGA1Q9Y5H4 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
PCDHGA1Q9Y5H4 DENND3-207ENST00000518347 850 ntTSL 2 BASIC21.63■■□□□ 1.05
PCDHGA1Q9Y5H4 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC21.63■■□□□ 1.05
PCDHGA1Q9Y5H4 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
PCDHGA1Q9Y5H4 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
PCDHGA1Q9Y5H4 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
PCDHGA1Q9Y5H4 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC21.62■■□□□ 1.05
PCDHGA1Q9Y5H4 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC21.62■■□□□ 1.05
PCDHGA1Q9Y5H4 AP005435.1-201ENST00000529293 1178 ntBASIC21.62■■□□□ 1.05
PCDHGA1Q9Y5H4 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
PCDHGA1Q9Y5H4 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
PCDHGA1Q9Y5H4 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
PCDHGA1Q9Y5H4 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC21.61■■□□□ 1.05
PCDHGA1Q9Y5H4 CEBPA-AS1-201ENST00000592982 2198 ntBASIC21.61■■□□□ 1.05
PCDHGA1Q9Y5H4 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PCDHGA1Q9Y5H4 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC21.61■■□□□ 1.05
PCDHGA1Q9Y5H4 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
PCDHGA1Q9Y5H4 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC21.61■■□□□ 1.05
PCDHGA1Q9Y5H4 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
PCDHGA1Q9Y5H4 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
PCDHGA1Q9Y5H4 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC21.61■■□□□ 1.05
PCDHGA1Q9Y5H4 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
PCDHGA1Q9Y5H4 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
PCDHGA1Q9Y5H4 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
PCDHGA1Q9Y5H4 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
PCDHGA1Q9Y5H4 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
PCDHGA1Q9Y5H4 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC21.6■■□□□ 1.05
PCDHGA1Q9Y5H4 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC21.6■■□□□ 1.05
PCDHGA1Q9Y5H4 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
PCDHGA1Q9Y5H4 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC21.6■■□□□ 1.05
PCDHGA1Q9Y5H4 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC21.6■■□□□ 1.05
PCDHGA1Q9Y5H4 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC21.6■■□□□ 1.05
PCDHGA1Q9Y5H4 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC21.6■■□□□ 1.05
PCDHGA1Q9Y5H4 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
PCDHGA1Q9Y5H4 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
PCDHGA1Q9Y5H4 DUSP8P4-201ENST00000399538 1761 ntBASIC21.59■■□□□ 1.05
PCDHGA1Q9Y5H4 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
PCDHGA1Q9Y5H4 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
PCDHGA1Q9Y5H4 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
PCDHGA1Q9Y5H4 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
PCDHGA1Q9Y5H4 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
PCDHGA1Q9Y5H4 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC21.59■■□□□ 1.05
PCDHGA1Q9Y5H4 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
PCDHGA1Q9Y5H4 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
PCDHGA1Q9Y5H4 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC21.59■■□□□ 1.05
PCDHGA1Q9Y5H4 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
PCDHGA1Q9Y5H4 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC21.59■■□□□ 1.05
PCDHGA1Q9Y5H4 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC21.59■■□□□ 1.05
PCDHGA1Q9Y5H4 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
PCDHGA1Q9Y5H4 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC21.59■■□□□ 1.05
PCDHGA1Q9Y5H4 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
PCDHGA1Q9Y5H4 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC21.58■■□□□ 1.05
PCDHGA1Q9Y5H4 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
PCDHGA1Q9Y5H4 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
PCDHGA1Q9Y5H4 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
PCDHGA1Q9Y5H4 NT5C3AP1-201ENST00000394500 1012 ntBASIC21.58■■□□□ 1.05
PCDHGA1Q9Y5H4 HLA-L-209ENST00000420110 1011 ntBASIC21.58■■□□□ 1.05
PCDHGA1Q9Y5H4 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC21.58■■□□□ 1.05
PCDHGA1Q9Y5H4 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC21.58■■□□□ 1.05
PCDHGA1Q9Y5H4 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.05
PCDHGA1Q9Y5H4 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
PCDHGA1Q9Y5H4 EI24-204ENST00000527235 1625 ntTSL 5 BASIC21.58■■□□□ 1.04
PCDHGA1Q9Y5H4 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC21.57■■□□□ 1.04
PCDHGA1Q9Y5H4 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC21.57■■□□□ 1.04
PCDHGA1Q9Y5H4 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
PCDHGA1Q9Y5H4 HLA-L-211ENST00000482052 1765 ntBASIC21.57■■□□□ 1.04
PCDHGA1Q9Y5H4 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PCDHGA1Q9Y5H4 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PCDHGA1Q9Y5H4 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
PCDHGA1Q9Y5H4 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 95.3 ms