Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SHANK1Q9Y566 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SHANK1Q9Y566 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC20.35■□□□□ 0.85
SHANK1Q9Y566 HLA-L-209ENST00000420110 1011 ntBASIC20.35■□□□□ 0.85
SHANK1Q9Y566 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
SHANK1Q9Y566 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
SHANK1Q9Y566 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SHANK1Q9Y566 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC20.35■□□□□ 0.85
SHANK1Q9Y566 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
SHANK1Q9Y566 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC20.35■□□□□ 0.85
SHANK1Q9Y566 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC20.35■□□□□ 0.85
SHANK1Q9Y566 pRNA.6-201ENST00000610482 90 ntBASIC20.35■□□□□ 0.85
SHANK1Q9Y566 pRNA.5-201ENST00000612139 90 ntBASIC20.35■□□□□ 0.85
SHANK1Q9Y566 pRNA.11-201ENST00000618423 90 ntBASIC20.35■□□□□ 0.85
SHANK1Q9Y566 pRNA.13-201ENST00000619112 90 ntBASIC20.35■□□□□ 0.85
SHANK1Q9Y566 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC20.35■□□□□ 0.85
SHANK1Q9Y566 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC20.34■□□□□ 0.85
SHANK1Q9Y566 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC20.34■□□□□ 0.85
SHANK1Q9Y566 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
SHANK1Q9Y566 GXYLT1P2-201ENST00000433312 1230 ntBASIC20.34■□□□□ 0.85
SHANK1Q9Y566 RAP2CP1-201ENST00000605103 478 ntBASIC20.34■□□□□ 0.85
SHANK1Q9Y566 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC20.34■□□□□ 0.85
SHANK1Q9Y566 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC20.33■□□□□ 0.85
SHANK1Q9Y566 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
SHANK1Q9Y566 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC20.33■□□□□ 0.85
SHANK1Q9Y566 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC20.33■□□□□ 0.85
SHANK1Q9Y566 MIR6089-201ENST00000616698 64 ntBASIC20.33■□□□□ 0.85
SHANK1Q9Y566 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SHANK1Q9Y566 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC20.32■□□□□ 0.84
SHANK1Q9Y566 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SHANK1Q9Y566 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SHANK1Q9Y566 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC20.32■□□□□ 0.84
SHANK1Q9Y566 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SHANK1Q9Y566 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC20.32■□□□□ 0.84
SHANK1Q9Y566 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC20.32■□□□□ 0.84
SHANK1Q9Y566 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SHANK1Q9Y566 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC20.32■□□□□ 0.84
SHANK1Q9Y566 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SHANK1Q9Y566 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SHANK1Q9Y566 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC20.31■□□□□ 0.84
SHANK1Q9Y566 EMC9-206ENST00000560403 872 ntTSL 2 BASIC20.31■□□□□ 0.84
SHANK1Q9Y566 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC20.31■□□□□ 0.84
SHANK1Q9Y566 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SHANK1Q9Y566 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SHANK1Q9Y566 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
SHANK1Q9Y566 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
SHANK1Q9Y566 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SHANK1Q9Y566 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
SHANK1Q9Y566 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
SHANK1Q9Y566 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SHANK1Q9Y566 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SHANK1Q9Y566 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC20.3■□□□□ 0.84
SHANK1Q9Y566 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SHANK1Q9Y566 AC010525.1-201ENST00000585559 441 ntBASIC20.3■□□□□ 0.84
SHANK1Q9Y566 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC20.3■□□□□ 0.84
SHANK1Q9Y566 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC20.3■□□□□ 0.84
SHANK1Q9Y566 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SHANK1Q9Y566 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SHANK1Q9Y566 AC093323.1-202ENST00000635031 2045 ntBASIC20.3■□□□□ 0.84
SHANK1Q9Y566 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
SHANK1Q9Y566 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC20.29■□□□□ 0.84
SHANK1Q9Y566 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
SHANK1Q9Y566 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC20.29■□□□□ 0.84
SHANK1Q9Y566 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SHANK1Q9Y566 NT5C3AP1-201ENST00000394500 1012 ntBASIC20.29■□□□□ 0.84
SHANK1Q9Y566 AC016769.1-201ENST00000409132 1010 ntBASIC20.29■□□□□ 0.84
SHANK1Q9Y566 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC20.29■□□□□ 0.84
SHANK1Q9Y566 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC20.29■□□□□ 0.84
SHANK1Q9Y566 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
SHANK1Q9Y566 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC20.29■□□□□ 0.84
SHANK1Q9Y566 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SHANK1Q9Y566 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SHANK1Q9Y566 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SHANK1Q9Y566 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC20.28■□□□□ 0.84
SHANK1Q9Y566 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC20.28■□□□□ 0.84
SHANK1Q9Y566 KRT18P61-201ENST00000585825 1298 ntBASIC20.28■□□□□ 0.84
SHANK1Q9Y566 NTF6G-201ENST00000591094 616 ntBASIC20.28■□□□□ 0.84
SHANK1Q9Y566 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
SHANK1Q9Y566 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC20.28■□□□□ 0.84
SHANK1Q9Y566 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
SHANK1Q9Y566 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SHANK1Q9Y566 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC20.28■□□□□ 0.84
SHANK1Q9Y566 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SHANK1Q9Y566 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SHANK1Q9Y566 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC20.28■□□□□ 0.84
SHANK1Q9Y566 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SHANK1Q9Y566 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC20.28■□□□□ 0.84
SHANK1Q9Y566 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SHANK1Q9Y566 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SHANK1Q9Y566 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SHANK1Q9Y566 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC20.27■□□□□ 0.84
SHANK1Q9Y566 ABHD17AP1-201ENST00000358206 933 ntBASIC20.27■□□□□ 0.84
SHANK1Q9Y566 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SHANK1Q9Y566 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC20.27■□□□□ 0.84
SHANK1Q9Y566 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC20.27■□□□□ 0.84
SHANK1Q9Y566 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC20.27■□□□□ 0.84
SHANK1Q9Y566 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SHANK1Q9Y566 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SHANK1Q9Y566 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
SHANK1Q9Y566 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC20.27■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms