Protein–RNA interactions for Protein: Q9H9S3

SEC61A2, Protein transport protein Sec61 subunit alpha isoform 2, humanhuman

Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEC61A2Q9H9S3 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SEC61A2Q9H9S3 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SEC61A2Q9H9S3 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
SEC61A2Q9H9S3 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
SEC61A2Q9H9S3 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SEC61A2Q9H9S3 AC010997.5-201ENST00000609182 354 ntBASIC20.01■□□□□ 0.79
SEC61A2Q9H9S3 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
SEC61A2Q9H9S3 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SEC61A2Q9H9S3 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SEC61A2Q9H9S3 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SEC61A2Q9H9S3 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC20.01■□□□□ 0.79
SEC61A2Q9H9S3 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
SEC61A2Q9H9S3 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC20■□□□□ 0.79
SEC61A2Q9H9S3 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SEC61A2Q9H9S3 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC20■□□□□ 0.79
SEC61A2Q9H9S3 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SEC61A2Q9H9S3 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
SEC61A2Q9H9S3 LSM4-201ENST00000252816 986 ntTSL 2 BASIC20■□□□□ 0.79
SEC61A2Q9H9S3 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SEC61A2Q9H9S3 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC20■□□□□ 0.79
SEC61A2Q9H9S3 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
SEC61A2Q9H9S3 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC20■□□□□ 0.79
SEC61A2Q9H9S3 AC131212.1-201ENST00000613771 668 ntBASIC20■□□□□ 0.79
SEC61A2Q9H9S3 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC20■□□□□ 0.79
SEC61A2Q9H9S3 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SEC61A2Q9H9S3 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC20■□□□□ 0.79
SEC61A2Q9H9S3 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC20■□□□□ 0.79
SEC61A2Q9H9S3 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC20■□□□□ 0.79
SEC61A2Q9H9S3 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SEC61A2Q9H9S3 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC19.99■□□□□ 0.79
SEC61A2Q9H9S3 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC19.99■□□□□ 0.79
SEC61A2Q9H9S3 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SEC61A2Q9H9S3 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC19.99■□□□□ 0.79
SEC61A2Q9H9S3 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SEC61A2Q9H9S3 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SEC61A2Q9H9S3 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC19.99■□□□□ 0.79
SEC61A2Q9H9S3 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SEC61A2Q9H9S3 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
SEC61A2Q9H9S3 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SEC61A2Q9H9S3 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SEC61A2Q9H9S3 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC19.99■□□□□ 0.79
SEC61A2Q9H9S3 USF2-207ENST00000595068 1612 ntTSL 5 BASIC19.98■□□□□ 0.79
SEC61A2Q9H9S3 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC19.98■□□□□ 0.79
SEC61A2Q9H9S3 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SEC61A2Q9H9S3 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
SEC61A2Q9H9S3 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SEC61A2Q9H9S3 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC19.98■□□□□ 0.79
SEC61A2Q9H9S3 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SEC61A2Q9H9S3 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC19.98■□□□□ 0.79
SEC61A2Q9H9S3 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SEC61A2Q9H9S3 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SEC61A2Q9H9S3 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
SEC61A2Q9H9S3 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC19.97■□□□□ 0.79
SEC61A2Q9H9S3 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SEC61A2Q9H9S3 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SEC61A2Q9H9S3 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SEC61A2Q9H9S3 CLTA-206ENST00000466396 695 ntTSL 2 BASIC19.97■□□□□ 0.79
SEC61A2Q9H9S3 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC19.97■□□□□ 0.79
SEC61A2Q9H9S3 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
SEC61A2Q9H9S3 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SEC61A2Q9H9S3 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC19.97■□□□□ 0.79
SEC61A2Q9H9S3 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SEC61A2Q9H9S3 C9orf163-202ENST00000624034 2573 ntBASIC19.96■□□□□ 0.79
SEC61A2Q9H9S3 H19-210ENST00000439725 1929 ntTSL 2 BASIC19.96■□□□□ 0.79
SEC61A2Q9H9S3 ME2-208ENST00000638937 2471 ntTSL 5 BASIC19.96■□□□□ 0.79
SEC61A2Q9H9S3 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SEC61A2Q9H9S3 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SEC61A2Q9H9S3 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SEC61A2Q9H9S3 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
SEC61A2Q9H9S3 CD72-202ENST00000378430 585 ntTSL 3 BASIC19.96■□□□□ 0.79
SEC61A2Q9H9S3 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC19.96■□□□□ 0.79
SEC61A2Q9H9S3 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SEC61A2Q9H9S3 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
SEC61A2Q9H9S3 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SEC61A2Q9H9S3 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
SEC61A2Q9H9S3 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SEC61A2Q9H9S3 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
SEC61A2Q9H9S3 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
SEC61A2Q9H9S3 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC19.96■□□□□ 0.79
SEC61A2Q9H9S3 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
SEC61A2Q9H9S3 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SEC61A2Q9H9S3 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
SEC61A2Q9H9S3 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC19.95■□□□□ 0.78
SEC61A2Q9H9S3 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SEC61A2Q9H9S3 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
SEC61A2Q9H9S3 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SEC61A2Q9H9S3 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC19.95■□□□□ 0.78
SEC61A2Q9H9S3 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SEC61A2Q9H9S3 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC19.95■□□□□ 0.78
SEC61A2Q9H9S3 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC19.95■□□□□ 0.78
SEC61A2Q9H9S3 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC19.95■□□□□ 0.78
SEC61A2Q9H9S3 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC19.95■□□□□ 0.78
SEC61A2Q9H9S3 AC092068.2-201ENST00000590491 1708 ntBASIC19.95■□□□□ 0.78
SEC61A2Q9H9S3 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SEC61A2Q9H9S3 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SEC61A2Q9H9S3 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC19.95■□□□□ 0.78
SEC61A2Q9H9S3 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
SEC61A2Q9H9S3 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
SEC61A2Q9H9S3 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC19.95■□□□□ 0.78
SEC61A2Q9H9S3 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 15.5 ms