Protein–RNA interactions for Protein: Q96EY7

PTCD3, Pentatricopeptide repeat domain-containing protein 3, mitochondrial, humanhuman

Known RBP Predictions only

Length 689 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3Q96EY7 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC22.25■■□□□ 1.15
PTCD3Q96EY7 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
PTCD3Q96EY7 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
PTCD3Q96EY7 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC22.25■■□□□ 1.15
PTCD3Q96EY7 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC22.25■■□□□ 1.15
PTCD3Q96EY7 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC22.24■■□□□ 1.15
PTCD3Q96EY7 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC22.24■■□□□ 1.15
PTCD3Q96EY7 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
PTCD3Q96EY7 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC22.24■■□□□ 1.15
PTCD3Q96EY7 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
PTCD3Q96EY7 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC22.24■■□□□ 1.15
PTCD3Q96EY7 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
PTCD3Q96EY7 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
PTCD3Q96EY7 KRT8P33-201ENST00000508125 1423 ntBASIC22.23■■□□□ 1.15
PTCD3Q96EY7 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
PTCD3Q96EY7 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC22.23■■□□□ 1.15
PTCD3Q96EY7 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
PTCD3Q96EY7 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC22.23■■□□□ 1.15
PTCD3Q96EY7 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
PTCD3Q96EY7 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
PTCD3Q96EY7 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
PTCD3Q96EY7 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
PTCD3Q96EY7 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
PTCD3Q96EY7 CD37-213ENST00000598095 1598 ntTSL 2 BASIC22.22■■□□□ 1.15
PTCD3Q96EY7 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
PTCD3Q96EY7 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC22.22■■□□□ 1.15
PTCD3Q96EY7 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
PTCD3Q96EY7 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC22.22■■□□□ 1.15
PTCD3Q96EY7 MIR4281-201ENST00000580852 62 ntBASIC22.22■■□□□ 1.15
PTCD3Q96EY7 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC22.22■■□□□ 1.15
PTCD3Q96EY7 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC22.22■■□□□ 1.15
PTCD3Q96EY7 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
PTCD3Q96EY7 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC22.22■■□□□ 1.15
PTCD3Q96EY7 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC22.21■■□□□ 1.15
PTCD3Q96EY7 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
PTCD3Q96EY7 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC22.21■■□□□ 1.15
PTCD3Q96EY7 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
PTCD3Q96EY7 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
PTCD3Q96EY7 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC22.21■■□□□ 1.15
PTCD3Q96EY7 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
PTCD3Q96EY7 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
PTCD3Q96EY7 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC22.21■■□□□ 1.15
PTCD3Q96EY7 AL022069.1-201ENST00000568025 1636 ntBASIC22.2■■□□□ 1.15
PTCD3Q96EY7 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC22.2■■□□□ 1.15
PTCD3Q96EY7 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC22.2■■□□□ 1.14
PTCD3Q96EY7 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC22.2■■□□□ 1.14
PTCD3Q96EY7 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
PTCD3Q96EY7 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC22.2■■□□□ 1.14
PTCD3Q96EY7 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC22.2■■□□□ 1.14
PTCD3Q96EY7 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
PTCD3Q96EY7 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
PTCD3Q96EY7 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
PTCD3Q96EY7 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
PTCD3Q96EY7 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC22.19■■□□□ 1.14
PTCD3Q96EY7 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC22.19■■□□□ 1.14
PTCD3Q96EY7 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC22.19■■□□□ 1.14
PTCD3Q96EY7 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC22.19■■□□□ 1.14
PTCD3Q96EY7 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
PTCD3Q96EY7 AC103724.3-201ENST00000564481 992 ntBASIC22.19■■□□□ 1.14
PTCD3Q96EY7 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC22.19■■□□□ 1.14
PTCD3Q96EY7 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
PTCD3Q96EY7 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
PTCD3Q96EY7 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
PTCD3Q96EY7 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC22.19■■□□□ 1.14
PTCD3Q96EY7 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC22.19■■□□□ 1.14
PTCD3Q96EY7 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
PTCD3Q96EY7 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
PTCD3Q96EY7 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
PTCD3Q96EY7 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC22.18■■□□□ 1.14
PTCD3Q96EY7 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC22.18■■□□□ 1.14
PTCD3Q96EY7 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC22.18■■□□□ 1.14
PTCD3Q96EY7 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
PTCD3Q96EY7 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC22.18■■□□□ 1.14
PTCD3Q96EY7 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC22.18■■□□□ 1.14
PTCD3Q96EY7 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
PTCD3Q96EY7 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
PTCD3Q96EY7 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
PTCD3Q96EY7 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
PTCD3Q96EY7 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
PTCD3Q96EY7 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
PTCD3Q96EY7 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC22.17■■□□□ 1.14
PTCD3Q96EY7 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
PTCD3Q96EY7 AL137060.1-201ENST00000618151 2648 ntBASIC22.16■■□□□ 1.14
PTCD3Q96EY7 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC22.16■■□□□ 1.14
PTCD3Q96EY7 LBH-205ENST00000407930 756 ntTSL 2 BASIC22.16■■□□□ 1.14
PTCD3Q96EY7 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC22.16■■□□□ 1.14
PTCD3Q96EY7 STK32C-205ENST00000456004 607 ntTSL 2 BASIC22.16■■□□□ 1.14
PTCD3Q96EY7 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC22.16■■□□□ 1.14
PTCD3Q96EY7 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
PTCD3Q96EY7 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC22.16■■□□□ 1.14
PTCD3Q96EY7 AF131216.4-201ENST00000638924 1588 ntBASIC22.16■■□□□ 1.14
PTCD3Q96EY7 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC22.15■■□□□ 1.14
PTCD3Q96EY7 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC22.15■■□□□ 1.14
PTCD3Q96EY7 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC22.15■■□□□ 1.14
PTCD3Q96EY7 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC22.15■■□□□ 1.14
PTCD3Q96EY7 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC22.15■■□□□ 1.14
PTCD3Q96EY7 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC22.15■■□□□ 1.14
PTCD3Q96EY7 AC131274.2-201ENST00000580697 1507 ntBASIC22.15■■□□□ 1.14
PTCD3Q96EY7 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC22.15■■□□□ 1.14
PTCD3Q96EY7 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC22.14■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 74.4 ms